# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u9tA	354	0.3203	e.62.1.1	119651
2j0pA	345	0.7437	e.62.1.1	137903
2hqvA	195	1.436	e.62.1.2	136674
2hq2A	354	1.902	e.62.1.1	136656
2ph0A	174	3.121		
3fm2A	135	3.230		
2w3xA	147	16.81		
2qq2A	193	17.35		
2v6oA	596	20.14		
3hm0A	167	20.34		
3d3iA	761	24.94		
2vobA	652	26.79		
1fyhB	229	27.93	b.1.2.1,b.1.2.1	22055,22056
2p4pA	86	29.01	d.145.1.4	149217
1s5uA	138	30.04	d.38.1.1	98573
3c7fA	487	38.34		
2ns1B	116	41.26	d.58.5.1	145694
2plsA	86	43.74	d.145.1.4	149638
1sv6A	269	45.05	d.177.1.1	106043
2oaiA	94	45.83	d.145.1.4	148705
1v37A	177	46.53	c.60.1.1	113497
3llbA	83	47.24		
2pliA	91	48.10	d.145.1.4	149630
2pii	112	48.11		
2p75A	177	51.19		
3fc0A	139	51.49		
1ywnA	316	52.73	d.144.1.7	124161
1kzlA	208	52.79	b.43.4.3,b.43.4.3	77635,77636
2oiwA	136	52.79	d.38.1.1	148794
2p13A	90	55.22	d.145.1.4	149152
2hx0A	154	62.42	d.290.1.3	136830
2r9zA	463	62.74		
1rgxA	114	64.09	g.77.1.1	104932
2yquA	455	64.37		
1gyhA	318	64.44	b.67.2.1	70757
1y0bA	197	65.97	c.61.1.1	122476
2essA	248	66.13	d.38.1.8,d.38.1.8	132346,132347
1vpmA	169	68.15	d.38.1.1	113967
1zupA	315	70.27	c.55.3.11	125681
2vdfA	253	73.69	f.4.4.2	152991
2uurA	245	73.84		
1nx8A	273	75.23	b.82.2.8	86374
2hdzA	91	77.20		
1zbtA	371	77.86		
3kyqA	199	77.95		
2eb4A	267	79.29		
1amuA	563	85.44	e.23.1.1	43351