# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u9tA	354	0.9236	e.62.1.1	119651
2j0pA	345	1.249	e.62.1.1	137903
2hq2A	354	2.932	e.62.1.1	136656
2hqvA	195	4.013	e.62.1.2	136674
3frhA	253	9.881		
2ph0A	174	12.49		
3fm2A	135	16.03		
1jmoA	480	30.60	e.1.1.1	77138
3hm0A	167	32.17		
2v6oA	596	33.63		
1fyhB	229	34.70	b.1.2.1,b.1.2.1	22055,22056
1s5uA	138	35.62	d.38.1.1	98573
1dxeA	256	39.21	c.1.12.5	29310
3d3iA	761	46.16		
2h1rA	299	47.55		
3d60A	314	49.11		
2pii	112	51.78		
2w3xA	147	52.08		
2pcjA	224	52.77		
2qq2A	193	54.02		
3ehwA	164	59.91	b.85.4.1	158154
3c7fA	487	60.77		
2uurA	245	60.89		
1xdyA	298	61.65	d.176.1.1	115186
2hf0A	316	65.42		
1y0bA	197	65.85	c.61.1.1	122476
2p75A	177	68.02		
2vobA	652	68.13		
1gyhA	318	68.28	b.67.2.1	70757
3b93A	133	68.88	b.22.1.1	154987
1kpgA	287	70.97	c.66.1.18	68735
2p13A	90	73.48	d.145.1.4	149152
1v37A	177	78.43	c.60.1.1	113497
2a2cA	478	80.06		
2p4pA	86	81.42	d.145.1.4	149217
3fc0A	139	84.37		
2j9cA	119	85.93		
3dasA	347	89.54		
2oiwA	136	89.88	d.38.1.1	148794