# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u9tA	354	2.334	e.62.1.1	119651
2j0pA	345	3.400	e.62.1.1	137903
2hq2A	354	11.66	e.62.1.1	136656
3fm2A	135	26.10		
2h1rA	299	42.06		
1jmoA	480	51.36	e.1.1.1	77138
1y0bA	197	56.43	c.61.1.1	122476
3c7bA	417	59.29	d.58.1.5,d.58.36.2,d.134.1.1	156001,156002,156003
2pliA	91	69.18	d.145.1.4	149630
2h98A	313	71.95		
3kjxA	344	74.73		
2j6vA	301	80.08		
1xdyA	298	83.63	d.176.1.1	115186
1fgkA	310	84.00	d.144.1.7	41693