# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j0pA	345	0.8670	e.62.1.1	137903
1u9tA	354	1.164	e.62.1.1	119651
2hqvA	195	2.984	e.62.1.2	136674
2hq2A	354	3.432	e.62.1.1	136656
3fm2A	135	5.222		
3frhA	253	12.03		
2ph0A	174	12.69		
2qq2A	193	17.60		
2h1rA	299	23.31		
2w3xA	147	24.67		
3hm0A	167	28.90		
2v6oA	596	30.96		
1s5uA	138	37.06	d.38.1.1	98573
2pcjA	224	43.24		
2pii	112	43.68		
2ns1B	116	44.88	d.58.5.1	145694
2j9cA	119	50.85		
1xdyA	298	52.47	d.176.1.1	115186
3d3iA	761	52.77		
1fyhB	229	55.90	b.1.2.1,b.1.2.1	22055,22056
2a2cA	478	56.03		
1kpgA	287	60.71	c.66.1.18	68735
1aj2A	282	69.27	c.1.21.1	29665
2vobA	652	69.84		
2hdzA	91	70.00		
2p75A	177	70.82		
1v37A	177	72.13	c.60.1.1	113497
2oiwA	136	76.56	d.38.1.1	148794
2p13A	90	78.89	d.145.1.4	149152
2h98A	313	79.27		
1sv6A	269	82.09	d.177.1.1	106043
2pliA	91	83.84	d.145.1.4	149630
1kt6A	183	84.16	b.60.1.1	84466
2oyyA	76	89.11