# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j0pA	345	0.8498	e.62.1.1	137903
1u9tA	354	1.342	e.62.1.1	119651
2hqvA	195	4.343	e.62.1.2	136674
2hq2A	354	4.347	e.62.1.1	136656
2qq2A	193	7.432		
3fm2A	135	9.451		
2w3xA	147	13.49		
2v6oA	596	13.53		
3hm0A	167	14.45		
2ph0A	174	18.47		
3frhA	253	30.55		
2oiwA	136	32.90	d.38.1.1	148794
2vobA	652	33.58		
2pii	112	36.02		
1s5uA	138	36.52	d.38.1.1	98573
2ns1B	116	37.65	d.58.5.1	145694
2j9cA	119	39.76		
1fyhB	229	41.03	b.1.2.1,b.1.2.1	22055,22056
1ywnA	316	44.28	d.144.1.7	124161
1xdyA	298	49.44	d.176.1.1	115186
2p75A	177	50.24		
2hdzA	91	51.18		
2gf6A	135	54.73	d.38.1.1	135077
1v37A	177	56.21	c.60.1.1	113497
3d3iA	761	59.33		
1sv6A	269	60.26	d.177.1.1	106043
1z2uA	150	61.77	d.20.1.1	124389
1vpmA	169	62.47	d.38.1.1	113967
2a2cA	478	62.62		
2pcjA	224	62.69		
3ehwA	164	64.54	b.85.4.1	158154
1qstA	160	67.59	d.108.1.1	40804
2uurA	245	70.13		
2h1rA	299	74.49		
2p4pA	86	76.73	d.145.1.4	149217
2oafA	151	78.53	d.38.1.1	148695
2eb4A	267	78.67		
1aj2A	282	79.36	c.1.21.1	29665
2yquA	455	79.84		
3b93A	133	80.58	b.22.1.1	154987
1nx8A	273	83.64	b.82.2.8	86374
3fc0A	139	83.98		
3ck1A	150	84.33		
2oyyA	76	84.54		
1gyhA	318	85.49	b.67.2.1	70757
2v1oA	151	86.08