# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j0pA	345	1.530	e.62.1.1	137903
1u9tA	354	1.622	e.62.1.1	119651
2hq2A	354	4.417	e.62.1.1	136656
2hqvA	195	9.460	e.62.1.2	136674
3frhA	253	9.534		
3fm2A	135	16.36		
2ph0A	174	26.44		
2v6oA	596	30.39		
3hm0A	167	35.38		
1fyhB	229	41.78	b.1.2.1,b.1.2.1	22055,22056
1s5uA	138	42.08	d.38.1.1	98573
1xdyA	298	43.32	d.176.1.1	115186
1y0bA	197	43.79	c.61.1.1	122476
2w3xA	147	44.38		
2uurA	245	45.44		
2p4pA	86	49.86	d.145.1.4	149217
3ehwA	164	57.22	b.85.4.1	158154
2qq2A	193	61.97		
3dasA	347	67.46		
3c7fA	487	68.93		
2p75A	177	71.27		
1kpgA	287	72.36	c.66.1.18	68735
2p13A	90	75.02	d.145.1.4	149152
2hdzA	91	76.10		
2hf0A	316	77.49		
2ns1B	116	77.53	d.58.5.1	145694
1kt6A	183	77.65	b.60.1.1	84466
2h1rA	299	79.21		
1v37A	177	80.98	c.60.1.1	113497
2oaiA	94	83.40	d.145.1.4	148705
2oiwA	136	83.97	d.38.1.1	148794
3g5oB	102	86.49		
2r9zA	463	86.71		
2plsA	86	89.74	d.145.1.4	149638