# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cfuA	159	0.1982		
1tzaA	134	0.8174	b.1.23.1	107468
1aop	497	0.8541		
1xvsA	126	1.093	b.1.23.1	116095
3hn9A	123	5.000		
2wnxA	170	8.990		
1lfaA	187	9.194	c.62.1.1	34122
1ifrA	121	11.06	b.1.16.1	71203
1v10A	521	14.40	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1cauB	184	16.28	b.82.1.2	28103
2eodA	66	16.33		
3eypA	469	20.13		
1caxB	184	21.18	b.82.1.2	28105
2g3rA	123	25.17	b.34.9.1,b.34.9.1	134570,134571
1g43A	160	26.70	b.2.2.2	22392
2kreA	100	27.02		
1fyeA	229	30.66	c.23.16.4	31477
3gztB	255	31.83		
1q7fA	286	31.96	b.68.9.1	96036
2h6oA	470	33.17		
1zvfA	176	33.38	b.82.1.20	146029
1dt9A	437	37.06	c.55.4.2,d.79.3.2,d.91.1.1	33738,39815,40257
1e4fT	419	40.07	c.55.1.1,c.55.1.1	33453,33454
2b30A	301	41.07	c.108.1.10	127759
1xfuA	747	41.27		
1nbcA	155	44.01	b.2.2.2	22390
2wb7A	526	44.64		
2fug7	129	45.51		
2q0lA	311	49.13		
2f4pA	147	59.12	b.82.1.9	132933
1ufmA	84	59.37	a.4.5.47	107816
3k0bA	393	60.15		
2we1A	286	65.58		
2pviA	157	66.18	c.52.1.6	33302
1jsdB	176	66.25	h.3.1.1	63259
2dytA	312	68.23		
1xfxA	777	73.41		
1et7A	341	73.48	b.6.1.3,b.6.1.3	23070,23071
1qmyA	167	74.31	d.3.1.2	37094
2qcuA	501	74.75		
1eyuA	157	77.16	c.52.1.6	33304
3kkzA	267	80.69		
2bkfA	87	80.97	d.15.2.2	128699
2i09A	403	81.09	c.76.1.5,d.327.1.1	136946,136947
1zpuA	534	83.26		
3hxrA	761	85.80		
2durA	253	87.25		
2jv2A	83	87.32		
2hhzA	150	87.66		
3isyA	120	89.61