# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cfuA	159	0.5957		
1tzaA	134	2.572	b.1.23.1	107468
1xvsA	126	2.648	b.1.23.1	116095
1aop	497	3.307		
1lfaA	187	12.90	c.62.1.1	34122
3hn9A	123	20.13		
1ifrA	121	24.11	b.1.16.1	71203
2eodA	66	26.86		
1q7fA	286	27.26	b.68.9.1	96036
2kreA	100	27.61		
3eypA	469	30.94		
2q0lA	311	35.11		
2wnxA	170	36.04		
1v1aA	309	37.57	c.72.1.1	100249
1xfsA	178	41.55	d.129.3.5	109589
1fyeA	229	45.77	c.23.16.4	31477
2h6oA	470	45.90		
1nbcA	155	46.80	b.2.2.2	22390
3gztB	255	46.92		
1e4fT	419	47.18	c.55.1.1,c.55.1.1	33453,33454
2wb7A	526	48.53		
1a0p	290	48.53		
2qtdA	105	56.02		
1caxB	184	59.21	b.82.1.2	28105
1cauB	184	59.65	b.82.1.2	28103
2cmgA	262	62.07		
1v10A	521	63.03	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1jsdB	176	67.09	h.3.1.1	63259
1zvfA	176	67.98	b.82.1.20	146029
3kbgA	213	69.74		
1pmhX	185	73.88	b.18.1.18	104193
2vfjA	366	75.74		
2pfeA	186	78.49		
2bkfA	87	83.06	d.15.2.2	128699
1g43A	160	85.19	b.2.2.2	22392