# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cfuA	159	0.8546		
1aop	497	3.608		
1xvsA	126	4.242	b.1.23.1	116095
1tzaA	134	5.048	b.1.23.1	107468
1lfaA	187	12.00	c.62.1.1	34122
3hn9A	123	26.68		
1ifrA	121	28.15	b.1.16.1	71203
3eypA	469	28.50		
2wnxA	170	29.74		
1q7fA	286	31.46	b.68.9.1	96036
2eodA	66	34.97		
3lapA	170	38.21		
2kreA	100	41.15		
2cmgA	262	44.01		
1nbcA	155	44.16	b.2.2.2	22390
2h6oA	470	47.17		
3gztB	255	49.96		
2qtdA	105	50.22		
1e4fT	419	53.20	c.55.1.1,c.55.1.1	33453,33454
1zvfA	176	53.55	b.82.1.20	146029
1cauB	184	53.87	b.82.1.2	28103
1fyeA	229	57.33	c.23.16.4	31477
1caxB	184	57.91	b.82.1.2	28105
2fug7	129	65.58		
1g43A	160	67.08	b.2.2.2	22392
3kkzA	267	67.27		
2hnfA	133	70.94		
2g3rA	123	73.42	b.34.9.1,b.34.9.1	134570,134571
1v10A	521	75.31	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1xfsA	178	76.38	d.129.3.5	109589
2yx1A	336	78.39		
1hbnB	442	79.02	a.89.1.1,d.58.31.2	60900,60901
1shuX	182	82.28	c.62.1.1	98882
1v1aA	309	87.06	c.72.1.1	100249
1jsdB	176	87.30	h.3.1.1	63259
2dp9A	124	89.51	b.122.1.5	131609