# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cfuA	159	0.8034		
1xvsA	126	1.758	b.1.23.1	116095
1tzaA	134	1.818	b.1.23.1	107468
1aop	497	2.678		
1lfaA	187	7.481	c.62.1.1	34122
1q7fA	286	14.18	b.68.9.1	96036
3hn9A	123	17.30		
1ifrA	121	20.16	b.1.16.1	71203
2b30A	301	20.52	c.108.1.10	127759
2q0lA	311	24.79		
2wnxA	170	25.18		
3cjxA	165	29.77		
1nbcA	155	31.81	b.2.2.2	22390
1v1aA	309	34.33	c.72.1.1	100249
3eypA	469	36.33		
3gztB	255	37.71		
2eodA	66	40.35		
1zvfA	176	40.50	b.82.1.20	146029
2kreA	100	41.40		
2h6oA	470	43.76		
1fyeA	229	47.04	c.23.16.4	31477
1v10A	521	49.29	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
2p9rA	102	51.08		
1xfsA	178	53.40	d.129.3.5	109589
2hhzA	150	55.23		
2wb7A	526	56.93		
3hbuP	462	57.22		
137lA	164	57.66	d.2.1.3	36791
1zpuA	534	61.26		
2qcuA	501	63.08		
1jsdB	176	64.40	h.3.1.1	63259
1g43A	160	65.16	b.2.2.2	22392
3isyA	120	65.25		
3db7A	127	66.92		
1caxB	184	67.04	b.82.1.2	28105
1ejpA	28	67.17	j.80.1.1	59430
1cauB	184	71.34	b.82.1.2	28103
3kkzA	267	71.88		
3dlmA	213	75.23		
1eyuA	157	79.74	c.52.1.6	33304
3hy3A	203	82.84		
2je8A	848	83.76	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	147998,147999,148000,148001,148002
2dp9A	124	84.55	b.122.1.5	131609
1qmyA	167	86.22	d.3.1.2	37094
2viuB	175	89.15	h.3.1.1	45676
3elgA	128	89.50	d.98.2.1	158182