# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cfuA	159	0.8350		
1tzaA	134	2.824	b.1.23.1	107468
1aop	497	3.222		
1xvsA	126	3.336	b.1.23.1	116095
1lfaA	187	8.110	c.62.1.1	34122
1q7fA	286	19.25	b.68.9.1	96036
3hn9A	123	20.34		
3eypA	469	20.60		
1ifrA	121	24.07	b.1.16.1	71203
2wnxA	170	25.85		
1nbcA	155	26.21	b.2.2.2	22390
1v10A	521	26.97	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1zvfA	176	32.33	b.82.1.20	146029
3gztB	255	33.83		
2b30A	301	40.41	c.108.1.10	127759
2eodA	66	41.36		
2g3rA	123	44.25	b.34.9.1,b.34.9.1	134570,134571
2pfeA	186	44.60		
1fyeA	229	52.25	c.23.16.4	31477
3hbuP	462	53.36		
1g43A	160	53.77	b.2.2.2	22392
2h6oA	470	54.90		
1caxB	184	55.04	b.82.1.2	28105
3kkzA	267	55.28		
1cauB	184	57.69	b.82.1.2	28103
1zpuA	534	61.89		
2q0lA	311	65.90		
1e4fT	419	66.59	c.55.1.1,c.55.1.1	33453,33454
2f4pA	147	68.63	b.82.1.9	132933
1v1aA	309	73.07	c.72.1.1	100249
2kreA	100	74.41		
2wb7A	526	74.45		
3cjxA	165	74.79		
1dt9A	437	75.51	c.55.4.2,d.79.3.2,d.91.1.1	33738,39815,40257
2uy2A	294	77.19		
2h5uA	499	78.75		
1ufmA	84	79.43	a.4.5.47	107816
2hhzA	150	80.47		
2fug7	129	81.12		
3h4fA	336	82.25		
1jsdB	176	85.26	h.3.1.1	63259
2dp9A	124	85.76	b.122.1.5	131609
1ejpA	28	89.07	j.80.1.1	59430