# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cfuA	159	0.2751		
1lfaA	187	5.031	c.62.1.1	34122
1aop	497	6.068		
1tzaA	134	6.501	b.1.23.1	107468
1xvsA	126	7.147	b.1.23.1	116095
1ifrA	121	9.250	b.1.16.1	71203
3hn9A	123	11.18		
3bleA	337	14.30		
1hbnB	442	15.37	a.89.1.1,d.58.31.2	60900,60901
2wnxA	170	21.37		
1mroB	442	27.05	a.89.1.1,d.58.31.2	18531,39449
3e9hA	493	33.28		
1v84A	253	36.33	c.68.1.7	108419
2yx1A	336	42.34		
1e6yB	433	43.22	a.89.1.1,d.58.31.2	18535,39453
1dutA	133	47.60	b.85.4.1	28355
2vfjA	366	53.93		
2dvtA	327	62.89	c.1.9.15	131793
2c82A	413	62.93		
2b30A	301	65.36	c.108.1.10	127759
3mdxA	178	66.41		
3kkzA	267	71.98		
2p9oA	169	74.03		
2we1A	286	75.24		
3f4fA	167	76.53		
2ol1A	147	78.14		
1yd6A	99	78.88		
3h4xA	339	79.39		
2eodA	66	79.81		
2bkfA	87	83.73	d.15.2.2	128699
2we0A	286	84.58		
2we2A	286	87.29		
2rovA	117	88.71