# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tzaA	134	0.5972	b.1.23.1	107468
1xvsA	126	0.6334	b.1.23.1	116095
3cfuA	159	0.8141		
1at0	145	4.365		
1so9A	164	6.095	b.146.1.1	105842
2wnxA	170	6.745		
1at0A	145	8.651	b.86.1.1	28374
1f13A	731	15.95	b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4	21877,22163,22164,37107
2r39A	118	18.41		
1nepA	130	24.87	b.1.18.7	80440
2iwaA	266	26.06		
3h8lA	409	28.81		
3i4oA	79	28.85		
1ca1	370	30.11		
2k2vA	126	33.14		
2k5wA	117	35.08	b.40.13.1	148275
2zbwA	335	35.47		
1ca1A	370	35.83	a.124.1.1,b.12.1.3	19340,23648
1v76A	96	39.77	b.137.1.1	113556
3fbsA	297	40.19		
1g43A	160	41.85	b.2.2.2	22392
3js6A	355	43.56		
1vjjA	692	43.90	b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4	100814,100815,100816,100817
1bkb	136	44.06		
2wxuA	370	47.01		
2q0lA	311	47.44		
1gutA	68	49.64	b.40.6.1	65576
1yycA	174	52.41		
3hrqA	357	57.03		
2kl6A	114	57.49		
2je8A	848	58.01	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	147998,147999,148000,148001,148002
3d0fA	106	59.13		
1f5mA	180	59.65	d.110.2.1	40895
1s14A	194	60.58	d.122.1.2	98329
1iz6A	138	61.33	b.34.5.2,b.40.4.5	76976,76977
2ve2A	492	61.66		
2ownA	262	62.01	d.38.1.8,d.38.1.8	149045,149046
3gd4A	511	62.74		
4ubpB	126	62.89	b.85.3.1	28345
2c1lA	358	66.18		
2cqsA	842	66.34		
1v7wA	807	69.12	a.102.1.4,b.30.5.3	108411,108412
3a0yA	152	74.43		
3c6cA	316	82.09		
1d6mA	653	82.20	e.10.1.1	43248
3lpmA	259	82.38		
3d00A	191	84.96		
1ybyA	215	86.14		
3da1A	561	86.95		
1ubpB	122	89.10	b.85.3.1	28346