# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	0.2454	b.1.23.1	116095
3cfuA	159	1.266		
2q9oA	559	10.50	b.6.1.3,b.6.1.3,b.6.1.3	150149,150150,150151
1ifrA	121	10.90	b.1.16.1	71203
1zvfA	176	10.99	b.82.1.20	146029
2ih8A	559	11.19	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
3dkhA	559	12.72		
3hn9A	123	13.36		
1g0sA	209	13.38	d.113.1.1	60187
1v84A	253	13.49	c.68.1.7	108419
3f10A	292	15.15		
3gvjA	670	16.59		
1i8dA	213	16.81	b.43.4.3,b.43.4.3	61953,61954
3ju4A	670	16.89		
2hbtA	247	20.23		
1pkoA	139	22.79	b.1.1.1	88147
2oqaA	241	22.93		
3m0oA	389	23.91		
1lla	628	24.03		
2f9hA	129	26.25	b.161.1.1	133162
1puoA	170	26.67	a.101.1.1,a.101.1.1	95134,95135
2uxtA	451	26.67		
1eo6A	117	27.27	d.15.1.3	37609
2jc9A	555	27.84		
3gvkA	670	28.46		
1iwmA	186	28.90	b.125.1.2	83758
3bs6A	280	33.33		
1g38A	393	33.64	c.66.1.27,d.287.1.1	111567,111568
2woyA	356	34.63		
1zn6A	227	37.43	d.303.1.1	125373
3fbqA	292	39.25		
2k5wA	117	42.73	b.40.13.1	148275
3khkA	544	44.58		
2pz4A	239	47.24		
2i5fA	109	47.64	b.55.1.1	147512
2p5kA	64	47.89	a.4.5.3	149249
2ed6A	170	47.92	b.170.1.1	146792
2cspA	130	50.04	b.1.2.1	130779
2fytA	340	50.71	c.66.1.6	134391
1v82A	253	51.01	c.68.1.7	108415
1ctf	74	51.82		
1hbnB	442	52.49	a.89.1.1,d.58.31.2	60900,60901
3ibsA	218	57.55		
2fug7	129	58.35		
1kzlA	208	58.42	b.43.4.3,b.43.4.3	77635,77636
3e1yA	451	59.83		
2ec4A	178	60.54		
3iylW	1299	60.96		
2ck2A	96	61.01		
1jovA	270	61.21	b.30.5.7	84192
2ghsA	326	64.24	b.68.6.1	135209
2dv6A	447	68.60		
2iorA	235	76.86		
3ecyA	160	78.08		
2zbvA	263	78.27		
2dxnA	274	79.00	d.159.1.11	146605
1ctfA	74	80.50	d.45.1.1	38759
1v10A	521	82.20	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
3mi6A	745	84.65		
2dytA	312	89.05