# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	0.2770	b.1.23.1	116095
3cfuA	159	0.5564		
1ifrA	121	3.884	b.1.16.1	71203
3hn9A	123	7.463		
1v84A	253	13.21	c.68.1.7	108419
1pkoA	139	14.25	b.1.1.1	88147
3gvkA	670	16.85		
3gvjA	670	18.04		
3ju4A	670	18.25		
2oqaA	241	21.17		
2ec4A	178	21.79		
2uxtA	451	24.41		
2hbtA	247	25.93		
2ih8A	559	26.31	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
1v82A	253	26.31	c.68.1.7	108415
3ij5A	211	26.66		
1g0sA	209	27.14	d.113.1.1	60187
1kzlA	208	27.53	b.43.4.3,b.43.4.3	77635,77636
2f9hA	129	29.08	b.161.1.1	133162
2pz4A	239	29.37		
1puoA	170	30.25	a.101.1.1,a.101.1.1	95134,95135
1eo6A	117	30.49	d.15.1.3	37609
2q9oA	559	32.05	b.6.1.3,b.6.1.3,b.6.1.3	150149,150150,150151
1i8dA	213	32.70	b.43.4.3,b.43.4.3	61953,61954
2cspA	130	33.20	b.1.2.1	130779
2jc9A	555	33.21		
1zvfA	176	34.42	b.82.1.20	146029
3i6sA	649	34.68		
2ed6A	170	34.89	b.170.1.1	146792
2wbmA	252	36.17		
2or4A	709	36.90	a.48.2.1,c.8.4.1,c.56.5.5	139258,139259,139260
1ctf	74	37.37		
1lla	628	38.28		
3dkhA	559	41.88		
2i5fA	109	41.90	b.55.1.1	147512
3bhxA	709	42.04	a.48.2.1,c.8.4.1,c.56.5.5	155289,155290,155291
3ibsA	218	42.34		
2fug7	129	44.79		
2fytA	340	45.37	c.66.1.6	134391
2woyA	356	46.72		
3ecyA	160	50.33		
3mn1A	189	53.77		
2ghsA	326	56.42	b.68.6.1	135209
1ctfA	74	57.99	d.45.1.1	38759
3m0oA	389	58.69		
1zn6A	227	60.42	d.303.1.1	125373
1wf3A	301	61.68	c.37.1.8,d.52.3.1	114574,114575
1mrj	247	63.06		
2grrA	161	63.62		
3f10A	292	66.93		
3bs6A	280	68.35		
3li5A	314	68.60		
1iwmA	186	70.40	b.125.1.2	83758
3hg3A	404	73.64		
3a5rA	387	74.61		
2gfaA	119	76.12	b.34.9.1,b.34.9.1	135089,135090
2qgoA	141	77.49		
3gmxA	154	78.97		
1llaA	628	80.35	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1ckmA	330	80.79	b.40.4.6,d.142.2.3	25358,41585
1ejpA	28	82.62	j.80.1.1	59430
2bkfA	87	84.89	d.15.2.2	128699
2k5wA	117	86.14	b.40.13.1	148275
1jovA	270	89.63	b.30.5.7	84192