# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	0.3137	b.1.23.1	116095
3cfuA	159	1.315		
2hbtA	247	7.772		
1g0sA	209	8.189	d.113.1.1	60187
3f10A	292	9.658		
1pkoA	139	10.83	b.1.1.1	88147
1g38A	393	11.60	c.66.1.27,d.287.1.1	111567,111568
3gvjA	670	12.71		
3gvkA	670	13.00		
2pz4A	239	13.44		
3ju4A	670	14.15		
1zvfA	176	15.26	b.82.1.20	146029
3ibsA	218	15.36		
2jc9A	555	17.21		
1v84A	253	22.68	c.68.1.7	108419
2ghsA	326	24.13	b.68.6.1	135209
2ih8A	559	24.45	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
3ij5A	211	25.12		
2oqaA	241	26.25		
1puoA	170	27.53	a.101.1.1,a.101.1.1	95134,95135
1eo6A	117	29.84	d.15.1.3	37609
2ed6A	170	31.99	b.170.1.1	146792
3hn9A	123	32.25		
3dkhA	559	32.91		
2q9oA	559	35.91	b.6.1.3,b.6.1.3,b.6.1.3	150149,150150,150151
3m0oA	389	36.96		
2woyA	356	37.82		
1i8dA	213	39.29	b.43.4.3,b.43.4.3	61953,61954
2fytA	340	42.11	c.66.1.6	134391
2ec4A	178	42.35		
3gmxA	154	43.58		
1ifrA	121	43.84	b.1.16.1	71203
3li5A	314	52.06		
2cspA	130	52.50	b.1.2.1	130779
1wf3A	301	52.68	c.37.1.8,d.52.3.1	114574,114575
1ejpA	28	54.21	j.80.1.1	59430
3f4lA	345	54.49		
1kzlA	208	57.74	b.43.4.3,b.43.4.3	77635,77636
1v82A	253	60.28	c.68.1.7	108415
2f9hA	129	60.61	b.161.1.1	133162
3fh1A	129	67.31		
3ecyA	160	68.77		
1rypA	243	70.43	d.153.1.4	41932
2p5kA	64	71.15	a.4.5.3	149249
3fbqA	292	73.09		
2bkfA	87	74.87	d.15.2.2	128699
3li4A	314	76.51		
1hbnB	442	77.23	a.89.1.1,d.58.31.2	60900,60901
2i5fA	109	77.85	b.55.1.1	147512
1lla	628	78.46		
2fnuA	375	79.47	c.67.1.4	133831
2wbmA	252	80.23		
2uxtA	451	82.50		
2fug7	129	86.05		
2k5wA	117	86.06	b.40.13.1	148275