# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	0.5518	b.1.23.1	116095
3cfuA	159	3.021		
1g38A	393	6.551	c.66.1.27,d.287.1.1	111567,111568
3f10A	292	8.078		
2p5kA	64	8.982	a.4.5.3	149249
1zvfA	176	9.113	b.82.1.20	146029
3gvkA	670	11.40		
1pkoA	139	12.43	b.1.1.1	88147
3gvjA	670	12.48		
3ju4A	670	14.18		
2hbtA	247	15.48		
1g0sA	209	15.96	d.113.1.1	60187
1hbnB	442	16.34	a.89.1.1,d.58.31.2	60900,60901
1e6yB	433	20.47	a.89.1.1,d.58.31.2	18535,39453
1v84A	253	21.64	c.68.1.7	108419
2pz4A	239	23.11		
2ih8A	559	25.78	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
1puoA	170	26.10	a.101.1.1,a.101.1.1	95134,95135
1eo6A	117	30.11	d.15.1.3	37609
3ibsA	218	30.17		
2fytA	340	31.54	c.66.1.6	134391
2ed6A	170	33.53	b.170.1.1	146792
3m0oA	389	33.71		
2oqaA	241	39.50		
2q9oA	559	40.51	b.6.1.3,b.6.1.3,b.6.1.3	150149,150150,150151
3f4lA	345	40.99		
3lapA	170	43.18		
3hn9A	123	44.02		
1ifrA	121	44.49	b.1.16.1	71203
2f9hA	129	44.58	b.161.1.1	133162
2uxtA	451	45.66		
3dkhA	559	49.95		
2jc9A	555	53.66		
2fug7	129	57.25		
1ejpA	28	57.91	j.80.1.1	59430
1i8dA	213	57.92	b.43.4.3,b.43.4.3	61953,61954
2cspA	130	62.33	b.1.2.1	130779
2ghsA	326	66.17	b.68.6.1	135209
1kzlA	208	67.86	b.43.4.3,b.43.4.3	77635,77636
1v82A	253	68.57	c.68.1.7	108415
2ec4A	178	68.61		
2dxnA	274	69.93	d.159.1.11	146605
1lla	628	72.11		
2jgbA	195	73.20		
1yn5A	103	79.68		
1l8bA	190	80.09	d.86.1.1	73683
3gmxA	154	81.01		
1wf3A	301	82.04	c.37.1.8,d.52.3.1	114574,114575
2woyA	356	83.21		
2fnuA	375	86.19	c.67.1.4	133831
3ij5A	211	87.42		
3ebeA	200	88.12