# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cfuA	159	0.3667		
1xvsA	126	0.3711	b.1.23.1	116095
3gvkA	670	6.875		
3hn9A	123	10.05		
3ju4A	670	10.47		
3gvjA	670	10.48		
1v84A	253	11.15	c.68.1.7	108419
3iahA	256	12.81		
3h6xA	148	17.26		
1ifrA	121	19.20	b.1.16.1	71203
1q5hA	147	19.40	b.85.4.1	95893
2ol1A	147	20.03		
2ed6A	170	20.44	b.170.1.1	146792
3lqwA	163	20.45		
3ehwA	164	20.83	b.85.4.1	158154
1ejpA	28	22.28	j.80.1.1	59430
3mdxA	178	22.33		
1euwA	152	24.65	b.85.4.1	28349
2dxnA	274	27.81	d.159.1.11	146605
3f4fA	167	29.57		
1nbcA	155	32.56	b.2.2.2	22390
1eo6A	117	37.46	d.15.1.3	37609
1v82A	253	39.37	c.68.1.7	108415
3bs6A	280	40.55		
1dunA	134	40.63	b.85.4.1	28371
1lla	628	41.35		
3ecyA	160	41.84		
1dhrA	241	42.95	c.2.1.2	29832
1jovA	270	45.23	b.30.5.7	84192
1vyqA	173	45.94	b.85.4.1	120548
2avxA	171	46.58		
2f9hA	129	53.19	b.161.1.1	133162
1e6iA	121	55.43	a.29.2.1	16969
1pkoA	139	56.46	b.1.1.1	88147
2p9oA	169	58.94		
3cwnA	337	58.96		
2d0jA	246	61.37		
1ctf	74	64.09		
1v2xA	194	67.54	c.116.1.1	100274
1g0sA	209	74.40	d.113.1.1	60187
2we1A	286	76.16		
3iccA	255	79.26		
2kctA	94	80.09		
1xf1A	926	81.48		
2we3A	264	83.61		
2oo1A	113	85.79		
2we0A	286	86.32		
1ctfA	74	89.39	d.45.1.1	38759