# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	0.3834	b.1.23.1	116095
3cfuA	159	1.720		
3gvjA	670	11.36		
3gvkA	670	11.96		
3ju4A	670	13.29		
1zvfA	176	14.59	b.82.1.20	146029
3m0oA	389	16.44		
1g38A	393	18.88	c.66.1.27,d.287.1.1	111567,111568
3f10A	292	19.65		
2ih8A	559	19.93	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
2woyA	356	21.90		
3ij5A	211	23.60		
2q9oA	559	25.03	b.6.1.3,b.6.1.3,b.6.1.3	150149,150150,150151
3dkhA	559	25.88		
1v84A	253	25.99	c.68.1.7	108419
2oqaA	241	27.80		
3ibsA	218	28.76		
2ec4A	178	29.91		
1g0sA	209	31.05	d.113.1.1	60187
1pkoA	139	31.84	b.1.1.1	88147
1eo6A	117	32.63	d.15.1.3	37609
2ghsA	326	34.07	b.68.6.1	135209
2jc9A	555	34.31		
1wf3A	301	35.52	c.37.1.8,d.52.3.1	114574,114575
2ed6A	170	35.88	b.170.1.1	146792
1i8dA	213	36.26	b.43.4.3,b.43.4.3	61953,61954
3hn9A	123	37.90		
3ecyA	160	38.84		
1kzlA	208	39.20	b.43.4.3,b.43.4.3	77635,77636
2pz4A	239	41.40		
1ifrA	121	43.70	b.1.16.1	71203
1lla	628	45.30		
1ctf	74	52.29		
2hbtA	247	53.07		
1ejpA	28	54.23	j.80.1.1	59430
2or4A	709	54.78	a.48.2.1,c.8.4.1,c.56.5.5	139258,139259,139260
1puoA	170	56.92	a.101.1.1,a.101.1.1	95134,95135
2i5fA	109	61.51	b.55.1.1	147512
3hy3A	203	63.45		
1v82A	253	64.68	c.68.1.7	108415
2cspA	130	64.95	b.1.2.1	130779
3hvdA	548	68.19		
2f9hA	129	69.85	b.161.1.1	133162
2uxtA	451	70.41		
2k5wA	117	71.59	b.40.13.1	148275
1ctfA	74	82.95	d.45.1.1	38759
2fytA	340	83.90	c.66.1.6	134391
1iwmA	186	84.50	b.125.1.2	83758
2jcbA	200	88.45		
3li5A	314	88.76		
3li4A	314	89.96		
3gmxA	154	89.98