# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xvsA 126 1.381 b.1.23.1 116095 2cmtA 172 1.404 2z6wA 165 2.393 b.62.1.1 154184 3dkhA 559 2.445 3l1zA 157 5.492 3fzgA 200 5.726 3gvkA 670 6.959 1vqqA 646 9.102 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1k7hA 476 9.648 c.76.1.1 72101 3m0oA 389 10.19 3cfuA 159 10.52 2ih8A 559 10.59 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2vvmA 495 11.42 1ri6A 343 12.19 b.69.11.1 97503 2pz4A 239 13.80 2hi2A 158 13.81 3hrpA 409 13.83 2cfeA 162 13.96 b.62.1.1 130375 1l0qA 391 13.99 b.1.3.1,b.69.2.3 77644,77645 2ghsA 326 14.36 b.68.6.1 135209 3hi7A 731 14.58 1oxwA 373 15.69 c.19.1.3 87539 2ed6A 170 15.75 b.170.1.1 146792 2p8bA 369 16.37 1n7oA 721 16.54 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2bitX 165 16.65 b.62.1.1 128590 2qxvA 361 17.65 3libA 290 17.88 3dasA 347 18.26 1uwwA 191 18.41 b.18.1.23 108079 3k0mA 165 19.21 1sr8A 298 19.24 e.54.1.1 105959 3lifA 254 20.02 2cb0A 333 23.43 1uy4A 145 24.55 b.18.1.10 108131 1l9cA 389 25.40 c.3.1.2,d.16.1.3 77815,77816 3hfqA 347 26.51 3hwuA 147 26.53 1xnzA 264 26.59 d.127.1.1 115673 3ivrA 509 26.73 3iiwA 365 28.10 3kw7A 502 28.12 2x52A 171 28.26 3jq1A 481 28.43 2yquA 455 30.92 2vdrB 461 31.76 1p7hL 286 32.83 b.1.18.1,b.2.5.3 94271,94272 3lv0A 267 33.65 3h9mA 436 34.11 2v7bA 529 34.60 1ksiA 642 35.35 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1c8uA 285 36.48 d.38.1.3,d.38.1.3 38547,38548 1kcxA 518 37.46 b.92.1.3,c.1.9.6 90953,90954 2zuvA 759 37.52 3aagA 291 40.80 2vgaA 207 41.16 3ibsA 218 42.37 3fpxA 499 42.61 2x25B 169 42.76 1nofA 383 43.72 b.71.1.2,c.1.8.3 92020,92021 2igvA 173 44.84 b.62.1.1 147667 1m7vA 363 45.55 d.174.1.1 78748 3f10A 292 46.31 1e43A 483 46.48 b.71.1.1,c.1.8.1 59217,59218 2wg3C 463 46.54 3lzkA 359 46.73 1j7xA 302 47.05 c.14.1.2 66425 2hrgA 496 48.41 1mucA 373 48.55 c.1.11.2,d.54.1.1 29236,38880 1lzjA 292 50.41 c.68.1.9 74352 3divA 499 52.07 3fbqA 292 52.37 1z2wA 192 53.32 d.159.1.7 124390 1e4mM 501 53.45 c.1.8.4 59226 2f8lA 344 54.06 c.66.1.45 133132 1pkoA 139 54.25 b.1.1.1 88147 1xf1A 926 57.11 1wf3A 301 57.46 c.37.1.8,d.52.3.1 114574,114575 2ftwA 521 57.81 b.92.1.3,c.1.9.6 134083,134084 3hn9A 123 58.49 1hv9A 456 58.56 b.81.1.4,c.68.1.5 28060,34518 1eo6A 117 61.30 d.15.1.3 37609 2aebA 322 61.94 c.42.1.1 126617 3dsmA 328 61.96 1s4uX 407 63.47 b.69.4.1 112027 3li5A 314 64.32 2vduB 450 65.12 1ec7A 446 65.53 c.1.11.2,d.54.1.1 29218,38862 3latA 213 65.74 3cncA 220 66.92 3bwsA 433 68.27 2aaoA 166 68.86 1yndA 165 69.01 b.62.1.1 123721 2j0wA 449 72.46 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 2z86A 625 72.83 3jvlA 120 73.76 2vwsA 267 73.92 1qksA 567 74.43 a.3.1.2,b.70.2.1 15951,27710 2htuA 390 76.23 3cpnA 330 76.44 2g8sA 353 77.00 1vm9A 111 78.31 b.33.1.1 108886 1kzlA 208 78.43 b.43.4.3,b.43.4.3 77635,77636 1ifrA 121 78.60 b.1.16.1 71203 1g0sA 209 80.15 d.113.1.1 60187 1g43A 160 81.56 b.2.2.2 22392 2k3aA 155 82.09 3e6fA 274 84.45 3khwA 204 85.60 3lf7A 634 85.76 1zfjA 491 86.63 d.37.1.1,c.1.5.1 144739,28638