# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	0.7642	b.1.23.1	116095
3cfuA	159	3.404		
3m0oA	389	8.011		
3f10A	292	8.227		
1g38A	393	8.461	c.66.1.27,d.287.1.1	111567,111568
1zvfA	176	11.07	b.82.1.20	146029
2ih8A	559	15.60	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
3gvjA	670	19.89		
2q9oA	559	21.26	b.6.1.3,b.6.1.3,b.6.1.3	150149,150150,150151
2ec4A	178	22.81		
3gvkA	670	23.56		
3ju4A	670	24.91		
1v84A	253	24.99	c.68.1.7	108419
1pkoA	139	26.38	b.1.1.1	88147
3dkhA	559	28.50		
3hn9A	123	32.08		
1eo6A	117	32.34	d.15.1.3	37609
2pz4A	239	34.61		
2ghsA	326	34.79	b.68.6.1	135209
2woyA	356	36.83		
1g0sA	209	40.44	d.113.1.1	60187
2oqaA	241	41.83		
1ifrA	121	41.92	b.1.16.1	71203
3f4lA	345	42.99		
3ecyA	160	43.18		
3ij5A	211	44.12		
1puoA	170	47.53	a.101.1.1,a.101.1.1	95134,95135
2fytA	340	48.42	c.66.1.6	134391
2ed6A	170	48.55	b.170.1.1	146792
2hbtA	247	49.37		
1ctf	74	51.24		
1kzlA	208	54.03	b.43.4.3,b.43.4.3	77635,77636
1i8dA	213	54.44	b.43.4.3,b.43.4.3	61953,61954
2jc9A	555	54.46		
1ejpA	28	55.28	j.80.1.1	59430
2p5kA	64	57.60	a.4.5.3	149249
3ibsA	218	58.77		
2uxtA	451	59.25		
2wbmA	252	60.92		
1hbnB	442	60.93	a.89.1.1,d.58.31.2	60900,60901
2fug7	129	61.67		
2cspA	130	63.25	b.1.2.1	130779
2f9hA	129	63.35	b.161.1.1	133162
1wf3A	301	65.28	c.37.1.8,d.52.3.1	114574,114575
1lla	628	65.87		
1v82A	253	66.96	c.68.1.7	108415
3gmxA	154	68.23		
2fnuA	375	69.27	c.67.1.4	133831
3fbqA	292	79.51		
3ebeA	200	81.15		
1ctfA	74	83.48	d.45.1.1	38759
2dxnA	274	88.58	d.159.1.11	146605