# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	0.6463	b.1.23.1	116095
3cfuA	159	3.828		
1zvfA	176	9.724	b.82.1.20	146029
3f10A	292	12.43		
3m0oA	389	21.15		
3gvkA	670	22.34		
1pkoA	139	22.67	b.1.1.1	88147
3ju4A	670	22.88		
3gvjA	670	23.08		
1g38A	393	24.55	c.66.1.27,d.287.1.1	111567,111568
1v84A	253	29.01	c.68.1.7	108419
3ibsA	218	30.35		
1i8dA	213	33.46	b.43.4.3,b.43.4.3	61953,61954
2pz4A	239	36.32		
2fytA	340	36.93	c.66.1.6	134391
1eo6A	117	38.48	d.15.1.3	37609
1ejpA	28	40.17	j.80.1.1	59430
1hbnB	442	44.28	a.89.1.1,d.58.31.2	60900,60901
3cwnA	337	45.53		
2ed6A	170	45.68	b.170.1.1	146792
1g0sA	209	46.00	d.113.1.1	60187
2ih8A	559	46.73	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
2fnuA	375	48.14	c.67.1.4	133831
3hn9A	123	49.59		
3ij5A	211	49.71		
3dkhA	559	50.12		
1kzlA	208	51.06	b.43.4.3,b.43.4.3	77635,77636
2f9hA	129	51.47	b.161.1.1	133162
2uxtA	451	52.65		
2q9oA	559	55.50	b.6.1.3,b.6.1.3,b.6.1.3	150149,150150,150151
2ec4A	178	59.32		
1puoA	170	60.08	a.101.1.1,a.101.1.1	95134,95135
1v72A	356	61.10	c.67.1.1	119860
1v82A	253	61.74	c.68.1.7	108415
2p5kA	64	63.14	a.4.5.3	149249
2wbmA	252	66.02		
2woyA	356	67.15		
1ctf	74	67.38		
3f4lA	345	69.58		
1e6yB	433	73.92	a.89.1.1,d.58.31.2	18535,39453
2oqaA	241	78.11		
3gmxA	154	82.93		
2i5fA	109	87.78	b.55.1.1	147512
2ghsA	326	88.74	b.68.6.1	135209