# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	0.5669	b.1.23.1	116095
3cfuA	159	2.380		
2ih8A	559	8.462	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
3ju4A	670	10.08		
3gvjA	670	10.75		
3dkhA	559	11.14		
3gvkA	670	11.35		
2q9oA	559	11.92	b.6.1.3,b.6.1.3,b.6.1.3	150149,150150,150151
1zvfA	176	12.66	b.82.1.20	146029
3f10A	292	12.77		
1pkoA	139	15.67	b.1.1.1	88147
3m0oA	389	18.88		
1v84A	253	19.22	c.68.1.7	108419
1g38A	393	25.86	c.66.1.27,d.287.1.1	111567,111568
3hn9A	123	28.90		
1i8dA	213	29.61	b.43.4.3,b.43.4.3	61953,61954
3ibsA	218	30.72		
2cspA	130	31.02	b.1.2.1	130779
2uxtA	451	31.96		
2pz4A	239	35.29		
2fnuA	375	38.42	c.67.1.4	133831
1eo6A	117	38.70	d.15.1.3	37609
2oqaA	241	39.07		
1g0sA	209	39.83	d.113.1.1	60187
2ghsA	326	41.17	b.68.6.1	135209
2fytA	340	43.77	c.66.1.6	134391
1puoA	170	46.06	a.101.1.1,a.101.1.1	95134,95135
1ejpA	28	48.43	j.80.1.1	59430
2f9hA	129	49.60	b.161.1.1	133162
2ed6A	170	49.84	b.170.1.1	146792
2woyA	356	51.65		
1v82A	253	55.44	c.68.1.7	108415
2jc9A	555	58.29		
3f4lA	345	60.14		
1hfuA	503	61.02	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
3ecyA	160	61.14		
1yn5A	103	62.16		
1wf3A	301	63.47	c.37.1.8,d.52.3.1	114574,114575
1kzlA	208	64.17	b.43.4.3,b.43.4.3	77635,77636
1ifrA	121	65.39	b.1.16.1	71203
1v10A	521	65.91	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
2k5wA	117	68.51	b.40.13.1	148275
3ij5A	211	71.33		
2i5fA	109	72.81	b.55.1.1	147512
3c97A	140	75.01		
2jgbA	195	78.85		
1hbnB	442	80.09	a.89.1.1,d.58.31.2	60900,60901
1ctf	74	81.39		
1lla	628	82.44		
2h5uA	499	82.72		
2fug7	129	84.52		
2or4A	709	85.18	a.48.2.1,c.8.4.1,c.56.5.5	139258,139259,139260