# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	2.176	b.1.23.1	116095
3cfuA	159	2.790		
3hn9A	123	22.74		
1pkoA	139	23.90	b.1.1.1	88147
1ifrA	121	24.63	b.1.16.1	71203
1v84A	253	32.80	c.68.1.7	108419
1kyfA	247	38.78	b.1.10.1,d.105.1.1	73220,73221
1xf1A	926	39.01		
1euwA	152	47.03	b.85.4.1	28349
2dxnA	274	48.72	d.159.1.11	146605
1auaA	296	52.61	a.5.3.1,c.13.1.1	16290,30882
3isyA	120	56.48		
1aua	296	65.08		
2oo1A	113	66.13		
3mdxA	178	69.44		
3ecyA	160	70.70		
1v82A	253	75.41	c.68.1.7	108415
2pz4A	239	82.09