# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	0.3021	b.1.23.1	116095
3cfuA	159	1.145		
3i6sA	649	1.163		
1j2gA	319	8.986	d.96.1.4,d.96.1.4	103824,103825
3d2fA	675	10.51		
2wnxA	170	11.87		
1mspA	126	12.80	b.1.11.2	22333
2fluX	308	13.03	b.68.11.1	133750
1at0	145	13.53		
3i4oA	79	15.85		
1gutA	68	16.27	b.40.6.1	65576
1zgkA	308	18.27	b.68.11.1	145998
1iz6A	138	18.42	b.34.5.2,b.40.4.5	76976,76977
2k5wA	117	20.06	b.40.13.1	148275
2qsvA	220	21.28		
1ca1	370	21.94		
2e56A	144	22.38		
1v76A	96	22.77	b.137.1.1	113556
3fmaA	100	23.16		
1so9A	164	24.46	b.146.1.1	105842
1ybyA	215	24.80		
1at0A	145	26.62	b.86.1.1	28374
1ca1A	370	26.79	a.124.1.1,b.12.1.3	19340,23648
2vpjA	301	26.89		
1t0yA	122	28.66	d.15.1.1	99066
1d6mA	653	29.12	e.10.1.1	43248
2qxlA	658	29.74		
1x2jA	316	30.00	b.68.11.1	121643
1khoA	370	31.63	a.124.1.1,b.12.1.3	72489,72490
2k2vA	126	33.41		
1g4mA	393	33.79	b.1.18.11,b.1.18.11	65143,65144
4ubpB	126	34.05	b.85.3.1	28345
1ifrA	121	36.57	b.1.16.1	71203
1yewA	382	36.59		
1wh2A	78	36.70	d.76.1.1	114630
3k3vA	100	38.54		
2gfaA	119	39.06	b.34.9.1,b.34.9.1	135089,135090
2e2dC	180	39.08	b.40.3.1	131980
1lmiA	131	43.66	b.1.19.1	78098
1w61A	414	46.24		
2wxuA	370	48.67		
3gd3A	535	49.86		
2q3zA	687	50.30	b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4	150037,150038,150039,150040
2qqrA	118	51.01	b.34.9.1,b.34.9.1	151226,151227
1bkb	136	53.13		
1a0pA	290	53.15	a.60.9.1,d.163.1.1	18105,42165
3hqcA	157	56.95		
1ks9A	291	59.08	a.100.1.7,c.2.1.6	68857,68858
1vm0A	130	60.59	d.68.6.2	108873
3fcgA	90	61.01		
2v1yA	108	65.28		
2o5cA	659	65.93		
1nepA	130	66.71	b.1.18.7	80440
2ia1A	178	66.79	d.359.1.1	147583
1uebA	184	67.58	b.34.5.2,b.40.4.5,b.40.4.5	107782,107783,107784
1bkbA	136	68.62	b.34.5.2,b.40.4.5	24609,25341
1x9lA	149	68.63	b.2.10.1	109528
3ldzE	73	69.39		
3i0tA	179	70.44		
1ddwA	120	71.85	b.55.1.4	27001
1a0p	290	73.30		
3fppA	341	73.74		
2gjdA	157	76.66		
2qm1A	326	81.17		
1g87A	614	83.93	a.102.1.2,b.2.2.2	83275,83276
1fr3A	67	86.02	b.40.6.1	25436
1g0dA	695	86.26	b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4	60166,60167,60168,60169
2pz4A	239	87.82		
2dg1A	333	87.84	b.68.6.1	131493
3ii7A	306	88.35		
3h43A	85	89.03