# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cfuA	159	0.5260		
1tzaA	134	0.7603	b.1.23.1	107468
1xvsA	126	1.617	b.1.23.1	116095
1ifrA	121	3.474	b.1.16.1	71203
2frnA	278	6.128	c.66.1.47	133993
2d0jA	246	11.36		
1v84A	253	13.75	c.68.1.7	108419
3f1lA	252	15.63		
3k6rA	278	17.27		
3lqwA	163	18.33		
3hn9A	123	23.56		
2ed6A	170	24.88	b.170.1.1	146792
1v82A	253	26.80	c.68.1.7	108415
3gvkA	670	35.13		
1nofA	383	35.55	b.71.1.2,c.1.8.3	92020,92021
3h6xA	148	39.17		
2p9oA	169	40.38		
1ejpA	28	43.95	j.80.1.1	59430
3ju4A	670	49.35		
2oz8A	389	51.89		
3gvjA	670	52.26		
3gxvA	123	53.69		
2nxbA	123	57.43		
1q5hA	147	58.00	b.85.4.1	95893
2qxxA	190	59.62		
2we2A	286	61.47		
2q0lA	311	62.21		
1dunA	134	64.26	b.85.4.1	28371
2vjxA	846	66.81	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	153203,153204,153205,153206,153207
1x0jA	122	67.00		
2he7A	283	67.58		
3a27A	272	67.60		
2yx1A	336	68.00		
1d3vA	323	68.84	c.42.1.1	32559
1yeyA	444	73.50	c.1.11.2,d.54.1.1	116664,116665
3ddkA	462	73.99		
1aua	296	74.27		
2cvjA	180	74.45		
1jvbA	347	76.97	b.35.1.2,c.2.1.1	77181,77182