# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tzaA	134	0.2931	b.1.23.1	107468
1xvsA	126	0.4694	b.1.23.1	116095
3cfuA	159	2.908		
1zvfA	176	6.583	b.82.1.20	146029
2k5wA	117	12.56	b.40.13.1	148275
1ifrA	121	14.31	b.1.16.1	71203
2frnA	278	17.57	c.66.1.47	133993
1v84A	253	19.31	c.68.1.7	108419
3gvjA	670	19.88		
3gvkA	670	20.69		
3fehA	386	20.75		
3ju4A	670	22.56		
2qe8A	343	25.10		
1gycA	499	27.99	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
2q0lA	311	31.94		
2p9rA	102	32.59		
1m3qA	317	33.18	a.96.1.3,d.129.1.2	91184,91185
3fh1A	129	42.72		
2wbmA	252	43.17		
2d0jA	246	43.74		
3hn9A	123	44.63		
1v82A	253	46.20	c.68.1.7	108415
2jc9A	555	46.22		
2ed6A	170	50.83	b.170.1.1	146792
1h8gA	95	51.01	b.109.1.1	65735
1v04A	355	54.55	b.68.6.2	100240
1ejpA	28	58.60	j.80.1.1	59430
1yzhA	214	61.45	c.66.1.53	124277
3fm8C	392	61.60		
1oalA	151	62.53	b.1.8.1	86739
2jcbA	200	62.70		
3ibsA	218	63.25		
3gmxA	154	66.80		
1i8dA	213	66.81	b.43.4.3,b.43.4.3	61953,61954
2woyA	356	71.59		
3ckaA	320	71.85		
1shuX	182	72.86	c.62.1.1	98882
1e29A	135	75.29	a.3.1.1	59161
1lroA	267	76.81	c.1.10.4	78161
3f08A	146	76.95		
1mjnA	179	78.01	c.62.1.1	79210
1gnuA	117	81.67	d.15.1.3	65403
1t3cA	421	88.27	d.92.1.7	106343