# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tzaA	134	0.6588	b.1.23.1	107468
1xvsA	126	1.218	b.1.23.1	116095
1zvfA	176	3.996	b.82.1.20	146029
3cfuA	159	7.481		
2frnA	278	9.152	c.66.1.47	133993
1m3qA	317	13.59	a.96.1.3,d.129.1.2	91184,91185
3fehA	386	16.50		
1ifrA	121	19.48	b.1.16.1	71203
2jc9A	555	23.91		
1shuX	182	24.78	c.62.1.1	98882
2k5wA	117	28.32	b.40.13.1	148275
1v84A	253	30.39	c.68.1.7	108419
1gycA	499	32.60	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
3gvjA	670	33.43		
3gvkA	670	37.24		
2qe8A	343	37.40		
3ju4A	670	41.12		
1e29A	135	42.65	a.3.1.1	59161
3crkA	407	50.28		
1pk6C	129	55.15	b.22.1.1	94803
2hft	218	55.78		
3hn9A	123	55.78		
2ed6A	170	58.62	b.170.1.1	146792
1v82A	253	62.49	c.68.1.7	108415
1jovA	270	64.12	b.30.5.7	84192
1ejpA	28	66.36	j.80.1.1	59430
1sr8A	298	69.26	e.54.1.1	105959
3ckaA	320	70.20		
1hbnB	442	70.64	a.89.1.1,d.58.31.2	60900,60901
3gmxA	154	74.87		
1mroB	442	75.16	a.89.1.1,d.58.31.2	18531,39449
1ta3B	303	76.00	c.1.8.3	106732
2wbmA	252	77.37		
1w9sA	142	77.37	b.18.1.10	114416
1t3cA	421	77.42	d.92.1.7	106343
2q0lA	311	78.54		
1h8gA	95	81.28	b.109.1.1	65735
2fug7	129	81.77		
1yzhA	214	83.27	c.66.1.53	124277
2d0jA	246	83.32		
2ih8A	559	83.66	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
3fm8C	392	84.29		
3c5cA	187	84.68		
3fh1A	129	85.87		
1mf7A	194	86.26	c.62.1.1	84937
1v04A	355	86.79	b.68.6.2	100240
2zooA	442	87.66		
3ibsA	218	89.15