# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xvsA	126	0.9591	b.1.23.1	116095
1tzaA	134	0.995	b.1.23.1	107468
3cfuA	159	3.455		
1zvfA	176	3.550	b.82.1.20	146029
2frnA	278	10.51	c.66.1.47	133993
1ifrA	121	20.71	b.1.16.1	71203
1shuX	182	21.24	c.62.1.1	98882
1v84A	253	27.79	c.68.1.7	108419
1m3qA	317	28.08	a.96.1.3,d.129.1.2	91184,91185
2k5wA	117	29.18	b.40.13.1	148275
2qe8A	343	30.74		
3gvjA	670	31.80		
3gvkA	670	32.39		
3ju4A	670	32.48		
1hbnB	442	38.39	a.89.1.1,d.58.31.2	60900,60901
1mroB	442	40.72	a.89.1.1,d.58.31.2	18531,39449
1e29A	135	41.34	a.3.1.1	59161
2q0lA	311	41.82		
1v82A	253	47.41	c.68.1.7	108415
3crkA	407	47.49		
1sr8A	298	49.18	e.54.1.1	105959
3fehA	386	49.20		
1i8dA	213	51.68	b.43.4.3,b.43.4.3	61953,61954
2wbmA	252	53.65		
3ibsA	218	54.60		
1ejpA	28	54.81	j.80.1.1	59430
3k1yA	191	55.22		
2d0jA	246	55.61		
2ed6A	170	57.81	b.170.1.1	146792
2p5kA	64	58.76	a.4.5.3	149249
3hn9A	123	61.53		
2uxtA	451	63.46		
2hft	218	67.93		
1ta3B	303	72.09	c.1.8.3	106732
1gycA	499	72.24	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
1f3lA	321	73.19	c.66.1.6	59630
2jc9A	555	77.80		
3fh1A	129	80.71		
1e6yB	433	83.22	a.89.1.1,d.58.31.2	18535,39453
3a27A	272	83.24		
1e17A	150	83.93	a.4.5.14	16143
1jovA	270	87.77	b.30.5.7	84192