# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tzaA	134	0.4025	b.1.23.1	107468
1xvsA	126	0.6357	b.1.23.1	116095
3cfuA	159	1.436		
1zvfA	176	3.330	b.82.1.20	146029
1ifrA	121	8.817	b.1.16.1	71203
2frnA	278	10.74	c.66.1.47	133993
2k5wA	117	12.10	b.40.13.1	148275
3fehA	386	15.20		
3ju4A	670	16.47		
1shuX	182	17.11	c.62.1.1	98882
3gvkA	670	17.83		
3gvjA	670	17.85		
1v84A	253	18.77	c.68.1.7	108419
1m3qA	317	21.67	a.96.1.3,d.129.1.2	91184,91185
1v82A	253	30.47	c.68.1.7	108415
3ibsA	218	33.04		
1gycA	499	33.62	b.6.1.3,b.6.1.3,b.6.1.3	70748,70749,70750
3hn9A	123	36.15		
1i8dA	213	37.58	b.43.4.3,b.43.4.3	61953,61954
1sr8A	298	38.37	e.54.1.1	105959
2ih8A	559	40.29	b.6.1.3,b.6.1.3,b.6.1.3	137407,137408,137409
2q0lA	311	41.15		
1mroB	442	42.02	a.89.1.1,d.58.31.2	18531,39449
2ed6A	170	43.57	b.170.1.1	146792
1hbnB	442	44.41	a.89.1.1,d.58.31.2	60900,60901
2d0jA	246	45.03		
1ejpA	28	47.03	j.80.1.1	59430
3crkA	407	47.38		
3fh1A	129	48.29		
2qe8A	343	52.51		
1zpuA	534	53.40		
2hft	218	58.65		
2q9oA	559	62.99	b.6.1.3,b.6.1.3,b.6.1.3	150149,150150,150151
1e29A	135	63.14	a.3.1.1	59161
1yn5A	103	63.55		
2cspA	130	64.27	b.1.2.1	130779
2uxtA	451	66.10		
2jc9A	555	68.35		
1h8gA	95	69.58	b.109.1.1	65735
1hfuA	503	69.91	b.6.1.3,b.6.1.3,b.6.1.3	65827,65828,65829
2wbmA	252	70.95		
1yvcA	70	71.21	b.40.4.12	124094
1kzlA	208	73.54	b.43.4.3,b.43.4.3	77635,77636
2eceA	462	74.28		
1oalA	151	75.67	b.1.8.1	86739
1y3tA	337	77.20	b.82.1.5	122600
3l53A	224	86.12		
3dqyA	106	89.27