# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tzaA	134	0.7147	b.1.23.1	107468
3cfuA	159	1.046		
1xvsA	126	2.496	b.1.23.1	116095
1ifrA	121	5.493	b.1.16.1	71203
1v84A	253	11.34	c.68.1.7	108419
2d0jA	246	19.08		
2jc9A	555	34.65		
3f1lA	252	44.78		
3gxvA	123	45.34		
3cu0A	281	47.55	c.68.1.7	156986
2avxA	171	53.01		
1fgyA	127	54.34	b.55.1.1	26976
1aua	296	57.06		
1v82A	253	57.30	c.68.1.7	108415
2oqzA	223	59.26	b.100.1.1	139255
3hn9A	123	65.11		
2woyA	356	67.36		
1kwsA	261	67.50	c.68.1.7	73083
2ajtA	500	68.60	b.43.2.2,c.85.1.2	126894,126895
1fdr	248	80.56		
2g9hD	218	81.38	b.40.2.2,d.15.6.1	145188,145189
1ejpA	28	82.19	j.80.1.1	59430
1auaA	296	83.34	a.5.3.1,c.13.1.1	16290,30882
2je8A	848	84.42	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	147998,147999,148000,148001,148002
3hs8A	273	84.47		
1e17A	150	85.14	a.4.5.14	16143
3isyA	120	86.09