# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cfuA	159	3.029		
1j1uA	306	6.035	c.26.1.1	83980
1tzaA	134	7.748	b.1.23.1	107468
2frnA	278	8.465	c.66.1.47	133993
1ifrA	121	9.077	b.1.16.1	71203
1xvsA	126	9.541	b.1.23.1	116095
1v84A	253	17.37	c.68.1.7	108419
2d0jA	246	19.08		
2jc9A	555	23.20		
1mroB	442	27.19	a.89.1.1,d.58.31.2	18531,39449
1d3vA	323	32.04	c.42.1.1	32559
1hbnB	442	33.44	a.89.1.1,d.58.31.2	60900,60901
1a76	326	35.71		
1y3tA	337	36.74	b.82.1.5	122600
3c5cA	187	38.40		
2g19A	244	41.68		
3hn9A	123	42.90		
1mf7A	194	48.74	c.62.1.1	84937
1e6yB	433	49.95	a.89.1.1,d.58.31.2	18535,39453
1dcuA	357	52.68	e.7.1.1	42943
2k5wA	117	55.30	b.40.13.1	148275
1shuX	182	57.04	c.62.1.1	98882
1yd6A	99	60.37		
3a27A	272	61.14		
2oz8A	389	62.89		
3ckaA	320	65.26		
3gxvA	123	68.41		
2woyA	356	68.61		
3dptA	332	70.49		
3k6rA	278	71.16		
1fgyA	127	71.47	b.55.1.1	26976
2d40A	354	74.82	b.82.1.23	146454
1e17A	150	75.49	a.4.5.14	16143
3k1yA	191	78.53		
3lqwA	163	78.73		
1yzhA	214	79.29	c.66.1.53	124277
3c5mA	396	85.46		
2bkfA	87	85.82	d.15.2.2	128699
3ecyA	160	89.69		
2p1gA	249	89.85