# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cfuA	159	0.8426		
1tzaA	134	1.376	b.1.23.1	107468
1xvsA	126	1.535	b.1.23.1	116095
2wnxA	170	3.508		
1so9A	164	7.526	b.146.1.1	105842
3i6sA	649	10.44		
3hqcA	157	16.39		
1edzA	320	18.08	c.2.1.7,c.58.1.2	30287,33935
1v7wA	807	19.14	a.102.1.4,b.30.5.3	108411,108412
2obfA	289	19.28		
2f9wA	271	20.64	c.55.1.13,c.55.1.13	133174,133175
1at0A	145	21.64	b.86.1.1	28374
1ifrA	121	21.91	b.1.16.1	71203
3ecrA	364	27.62		
2g72A	289	29.48	c.66.1.15	134724
1vm0A	130	31.09	d.68.6.2	108873
1j83A	180	31.59	b.18.1.12	66430
3d00A	191	32.40		
1ex0A	731	32.88	b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4	90465,90466,90467,90468
1ks9A	291	32.93	a.100.1.7,c.2.1.6	68857,68858
3g7xA	171	33.89		
3i3eA	1023	35.11		
2k2vA	126	39.14		
1g0dA	695	39.18	b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4	60166,60167,60168,60169
3fmaA	100	40.50		
2h2tB	175	41.86		
2ve2A	492	43.12		
2k5wA	117	43.81	b.40.13.1	148275
1d6mA	653	43.81	e.10.1.1	43248
1fr3A	67	44.64	b.40.6.1	25436
1qveA	126	46.14	d.24.1.1	104594
2o5cA	659	47.48		
2cdpA	160	47.93		
1n62C	288	48.17	d.87.2.1,d.145.1.3	80094,80095
1at0	145	50.55		
1hnnA	282	50.79	c.66.1.15	65895
3k3vA	100	52.08		
2p3yA	491	52.26	e.65.1.1	149190
1w61A	414	53.32		
1g87A	614	53.95	a.102.1.2,b.2.2.2	83275,83276
1gwmA	153	55.55	b.18.1.19	83348
1gutA	68	58.06	b.40.6.1	65576
1vjjA	692	58.15	b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4	100814,100815,100816,100817
2kl6A	114	58.39		
1nepA	130	61.28	b.1.18.7	80440
3i4oA	79	63.33		
3da1A	561	64.76		
2fcoA	200	65.70		
1khoA	370	66.28	a.124.1.1,b.12.1.3	72489,72490
2iafA	151	66.57	d.81.2.1	137157
2hxrA	238	68.11		
2fr5A	146	68.19	c.97.1.1	133965
2bbkH	355	71.59	b.69.2.1	27634
2f7bA	233	74.26		
3h8lA	409	75.16		
1yycA	174	75.63		
1zp7A	206	76.16		
1g4mA	393	76.73	b.1.18.11,b.1.18.11	65143,65144
2c78A	405	76.75	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
3hn9A	123	78.56		
2vsdA	105	79.51		
1iz6A	138	80.04	b.34.5.2,b.40.4.5	76976,76977
1ca1	370	80.60		
1y1oA	203	82.08	c.52.1.28	116345
2akaB	299	82.56	c.37.1.8	126914
1vq0A	302	82.96	d.193.1.1,g.81.1.1	114000,114001
1ybyA	215	83.91		
1wcqA	601	84.32	b.1.18.2,b.18.1.1,b.68.1.1	120894,120895,120896
1rrpB	134	87.99	b.55.1.3	26995