# List of top-scoring protein chains for T0573.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2brtA 355 1.22e-38 b.82.2.1 129018 1gp6A 356 1.23e-38 b.82.2.1 65441 1w9yA 319 1.71e-38 b.82.2.1 120801 1odmA 331 1.42e-26 b.82.2.1 86875 2bjsA 325 1.52e-26 b.82.2.1 128632 1e5hA 308 1.12e-19 1dcs b.82.2.1 59269 1e5iA 306 1.16e-19 1dcs b.82.2.1 59270 1dcsA 311 1.17e-19 b.82.2.1 28124 1w28A 331 1.35e-19 b.82.2.1 114098 1hjgA 311 4.61e-19 1dcs b.82.2.1 61082 3emrA 310 7.37e-01 1nx8A 273 2.76e+00 b.82.2.8 86374 1j7kA 334 3.09e+00 1hqcA a.4.5.11,c.37.1.20 62695,62696 1g67A 225 3.72e+00 c.1.3.1 60311 2tpsA 227 3.74e+00 2tpsA c.1.3.1 28591 1g4sA 226 3.76e+00 c.1.3.1 60247 1g6cA 227 3.81e+00 c.1.3.1 60315 1g69A 228 3.85e+00 c.1.3.1 60313 1in7A 334 4.41e+00 1hqcA a.4.5.11,c.37.1.20 62603,62604 1in4A 334 4.70e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 1in6A 334 4.71e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 1in8A 334 4.77e+00 1hqcA a.4.5.11,c.37.1.20 62605,62606 1in5A 334 4.81e+00 1hqcA a.4.5.11,c.37.1.20 62599,62600 1zunA 325 7.22e+00 c.26.2.2 125676 1ecmA 109 7.59e+00 1ecmA a.130.1.1 19492 1zd9A 188 8.41e+00 c.37.1.8 124938 1w1b1 257 8.68e+00 2al7A 186 8.74e+00 c.37.1.8 126972 1w17A 263 9.63e+00 c.6.2.3 120573 2dulA 378 1.01e+01 c.66.1.58 146588 1lfkA 398 1.03e+01 a.104.1.1 77926 2in3A 216 1.07e+01 3kb9A 382 1.13e+01 1ru8A 232 1.24e+01 c.26.2.1 97849 3h7eA 237 1.27e+01 2d1uA 104 1.33e+01 2bs9A 503 1.44e+01 b.71.1.2,c.1.8.3 129062,129063 1w91A 503 1.45e+01 b.71.1.2,c.1.8.3 120758,120759 1bsmA 201 1.46e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 2i7dA 193 1.51e+01 2bfgA 503 1.53e+01 b.71.1.2,c.1.8.3 128423,128424 2h18A 193 1.55e+01 1c20A 128 1.58e+01 1c20A a.4.3.1 16079 3e82A 364 1.64e+01 3i4hX 273 1.70e+01 3fgxA 114 1.70e+01 3cmiA 171 1.74e+01 1dofA 403 1.74e+01 1c3cA a.127.1.1 19429 1lwjA 441 1.74e+01 b.71.1.1,c.1.8.1 74303,74304 3lgkA 382 1.76e+01 3e9hA 493 1.81e+01 1ny1A 240 2.15e+01 c.6.2.3 86395 2cu3A 64 2.30e+01 d.15.3.2 146428 2csgA 424 2.36e+01 b.82.2.12 130768 1xecA 329 2.49e+01 c.10.2.7 115227 1kqqA 139 2.50e+01 a.4.3.1 72885 1xkuA 330 2.50e+01 c.10.2.7 115425 1rdo1 113 2.56e+01 1rtm1 3lg5A 381 2.60e+01 2f7tA 227 2.70e+01 1kza1 115 2.75e+01 1zzvA 80 2.84e+01 1kmoA 774 2.85e+01 f.4.3.3 72753 2gbcA 730 2.86e+01 1bv4A 118 2.87e+01 1rtm1 d.169.1.1 42380 3d3wB 245 2.92e+01 2itnA 327 3.18e+01 2itvA 327 3.20e+01 2eb2A 334 3.22e+01 2rfeA 324 3.22e+01 2itwA 327 3.24e+01 d.144.1.7 137646 2eb3A 334 3.25e+01 2jitA 327 3.26e+01 2j5eA 327 3.26e+01 2gs6A 330 3.26e+01 d.144.1.7 135578 2jiuA 328 3.27e+01 1m14A 333 3.27e+01 d.144.1.7 78367 2io0A 232 3.31e+01 d.3.1.7 145530 2jivA 328 3.31e+01 3ikaA 331 3.31e+01 1fujA 221 3.35e+01 1a7s b.47.1.2 26349 1pnuM 111 3.38e+01 i.1.1.1 88210 2rgpA 315 3.39e+01 1nwyM 113 3.41e+01 i.1.1.2 86357 2qyxA 238 3.42e+01 2zjrL 114 3.43e+01 c.55.4.1 154565 1xkkA 352 3.46e+01 d.144.1.7 115409 2kk0A 145 3.46e+01 3hotA 345 3.51e+01 1i51A 148 3.63e+01 c.17.1.1 66029 2p5iA 288 3.68e+01 d.104.1.3 149248 1th0A 226 3.74e+01 d.3.1.7 106903 2qs8A 418 3.79e+01 b.92.1.9,c.1.9.18 151311,151312 2wspA 449 3.90e+01 2p8uA 478 3.93e+01 2d6yA 202 3.96e+01 a.4.1.9,a.121.1.1 131313,131314 3muxA 251 4.01e+01 3gopA 361 4.03e+01 3d3wA 244 4.10e+01 1hl9A 449 4.13e+01 b.71.1.3,c.1.8.11 90650,90651 2zxdA 455 4.13e+01 2gs7A 330 4.16e+01 3gipA 480 4.27e+01 2droA 396 4.29e+01 2ql9A 173 4.40e+01 2oncA 731 4.46e+01 b.70.3.1,c.69.1.24 148891,148892 2g63A 726 4.46e+01 b.70.3.1,c.69.1.24 134686,134687 2ripA 729 4.46e+01 b.70.3.1,c.69.1.24 152095,152096 1tk3A 728 4.46e+01 b.70.3.1,c.69.1.24 107069,107070 2bgrA 738 4.46e+01 b.70.3.1,c.69.1.24 128496,128497 1pfqA 731 4.46e+01 b.70.3.1,c.69.1.24 88061,88062 2jidA 736 4.46e+01 b.70.3.1,c.69.1.24 148087,148088 3hacA 728 4.47e+01 2drqA 396 4.47e+01 1r9mA 733 4.48e+01 b.70.3.1,c.69.1.24 104870,104871 3g0bA 740 4.48e+01 1r9nA 739 4.48e+01 b.70.3.1,c.69.1.24 118745,118746 2cwqA 137 4.48e+01 a.152.1.4 130931 1wcyA 740 4.49e+01 b.70.3.1,c.69.1.24 120903,120904 2rguA 734 4.49e+01 b.70.3.1,c.69.1.24 152022,152023 2qjrA 748 4.49e+01 b.70.3.1,c.69.1.24 150830,150831 1nofA 383 4.65e+01 b.71.1.2,c.1.8.3 92020,92021 1v9yA 167 4.66e+01 d.110.3.2 108454 2drsA 396 4.69e+01 1yd2A 96 4.73e+01 1u8eA 728 4.75e+01 b.70.3.1,c.69.1.24 107733,107734 1wlsA 328 4.75e+01 2p5yA 311 4.76e+01 2z0fA 524 4.85e+01 2jarA 200 4.86e+01 1eepA 404 4.86e+01 1ak5 c.1.5.1 28636 1qh8B 519 4.89e+01 1qguB c.92.2.3 35634 2qt9A 766 5.01e+01 b.70.3.1,c.69.1.24 151329,151330 2drrA 396 5.01e+01 2dfkA 402 5.03e+01 a.87.1.1,b.55.1.1 145077,145078 2nxwA 565 5.06e+01 2burB 241 5.09e+01 b.3.6.1 129228 3cexA 172 5.18e+01 3kcmA 154 5.21e+01 1vbjA 281 5.47e+01 2x1wA 110 5.47e+01 2zl5A 295 5.67e+01 1mxgA 435 5.78e+01 b.71.1.1,c.1.8.1 85193,85194 3m6yA 275 5.84e+01 2opiA 212 5.88e+01 3a3vA 396 6.06e+01 2r6fA 972 6.07e+01 3e23A 211 6.08e+01 1wu4A 396 6.09e+01 a.102.1.2 121272 1np7A 489 6.17e+01 a.99.1.1,c.28.1.1 80677,80678 1wr6A 111 6.19e+01 a.7.8.1 144561 1y6nL 145 6.26e+01 a.26.1.3 144600 2evvA 207 6.34e+01 1wu6A 396 6.38e+01 a.102.1.2 121274 3kuxA 352 6.55e+01 1ay0A 680 6.61e+01 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31823,31824,33100 1lf1A 308 6.65e+01 c.1.8.3 73877 2cw5A 255 6.67e+01 2du5A 534 6.73e+01 2zl7A 295 6.78e+01 3d26A 301 6.81e+01 1yd8G 98 6.82e+01 a.7.8.1 144631 3by2A 305 6.82e+01 1tq5A 242 6.86e+01 b.82.1.12 119311 3by1A 313 6.89e+01 1losA 224 7.00e+01 c.1.2.3 74157 2reeA 224 7.02e+01 2pz0A 252 7.04e+01 3l8rA 120 7.15e+01 1tkbA 678 7.26e+01 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31807,31808,33092 1gpuA 680 7.27e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1wekA 217 7.30e+01 c.129.1.1 114553 2incA 491 7.36e+01 a.25.1.2 137524 2rdbA 498 7.38e+01 1t0qA 498 7.38e+01 a.25.1.2 106220 3bq3A 270 7.49e+01 1km3A 247 7.51e+01 c.1.2.3 72739 1wgoA 123 7.53e+01 b.1.3.1 114618 3cazA 294 7.59e+01 1dv7A 227 7.61e+01 1dvjA c.1.2.3 28550 3g1aA 228 7.65e+01 1loqA 228 7.65e+01 c.1.2.3 74155 2du3A 534 7.65e+01 1lp6A 229 7.66e+01 c.1.2.3 74171 2c20A 330 7.66e+01 1km2A 247 7.68e+01 c.1.2.3 72738 2pr7A 137 7.69e+01 1km4A 247 7.80e+01 c.1.2.3 72740 1dvjA 246 7.85e+01 1dvjA c.1.2.3 28546 3ec4A 228 7.91e+01 3fpnA 119 7.92e+01 2zz2A 252 7.93e+01 2nyvA 222 7.96e+01 1x1zA 252 7.99e+01 c.1.2.3 121613