# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w9yA 319 2.65e-39 b.82.2.1 120801 1gp6A 356 6.50e-39 b.82.2.1 65441 1odmA 331 2.29e-28 b.82.2.1 86875 1dcs 311 5.34e-21 1dcs 1dcsA 311 5.34e-21 b.82.2.1 28124 2hbtA 247 5.41e-01 2g19A 244 6.34e-01 1nrlA 316 9.75e-01 a.123.1.1 92091 2tpsA 227 1.21e+00 2tpsA c.1.3.1 28591 3emrA 310 1.62e+00 1g67A 225 2.09e+00 c.1.3.1 60311 1wzaA 488 2.17e+00 b.71.1.1,c.1.8.1 121489,121490 2du3A 534 2.31e+00 2i7dA 193 4.80e+00 1vljA 407 4.87e+00 e.22.1.2 108832 3fk2A 246 5.90e+00 1avmA 201 6.13e+00 1avmA a.2.11.1,d.44.1.1 15782,38745 2a1xA 308 6.53e+00 b.82.2.9 126022 1bsmA 201 7.59e+00 1avmA a.2.11.1,d.44.1.1 15780,38743 2ce7A 476 8.61e+00 a.269.1.1,c.37.1.20 130312,130313 2o9xA 181 1.02e+01 a.184.1.1 148689 2fjcA 156 1.02e+01 a.25.1.1 133559 2vdwB 287 1.11e+01 2csgA 424 1.38e+01 b.82.2.12 130768 1v7wA 807 1.40e+01 a.102.1.4,b.30.5.3 108411,108412 1tq5A 242 1.43e+01 b.82.1.12 119311 2rdcA 153 1.49e+01 1nx8A 273 1.51e+01 b.82.2.8 86374 1lwjA 441 1.54e+01 b.71.1.1,c.1.8.1 74303,74304 2dbnA 461 1.59e+01 2zhzA 183 1.63e+01 1c20A 128 1.68e+01 1c20A a.4.3.1 16079 2aamA 309 1.68e+01 c.1.8.15 126489 3hpxA 425 1.75e+01 2opwA 291 1.80e+01 3dyjA 332 1.87e+01 1vlqA 337 1.87e+01 c.69.1.25 108848 3e23A 211 2.02e+01 3fm2A 135 2.18e+01 1s12A 94 2.23e+01 d.64.2.1 112003 3blzA 128 2.24e+01 d.17.4.14 155403 3dkqA 243 2.25e+01 2j9cA 119 2.28e+01 2opiA 212 2.32e+01 1xxlA 239 2.34e+01 c.66.1.41 116203 1usuB 170 2.35e+01 d.83.2.1 99886 1ewqA 765 2.39e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 3m83A 337 2.52e+01 1j3mA 129 2.54e+01 d.129.7.1 103836 2h58A 330 2.61e+01 1g8yA 279 2.86e+01 1g8yA c.37.1.11 32302 1v74A 107 2.97e+01 d.243.1.1 100442 1lm8B 118 3.03e+01 d.15.1.1 74033 3i9wA 290 3.25e+01 3ms5A 388 3.29e+01 1wleA 501 3.42e+01 1bv4A 118 3.54e+01 1rtm1 d.169.1.1 42380 2z1uA 343 3.55e+01 1yz7A 188 3.57e+01 3f8uA 481 3.73e+01 2pr7A 137 3.82e+01 3gygA 289 3.85e+01 1i0aA 466 3.86e+01 1auwA a.127.1.1 61479 2qmaA 497 4.08e+01 1o5hA 214 4.10e+01 a.191.1.1 92497 2d5wA 603 4.14e+01 2cpmA 94 4.30e+01 2j7uA 635 4.35e+01 1b0aA 288 4.35e+01 1a4iA c.2.1.7,c.58.1.2 30286,33934 3lm7A 249 4.43e+01 3muxA 251 4.48e+01 2zhgA 154 4.50e+01 2vh3A 113 4.51e+01 2qr4A 587 4.62e+01 2jokA 186 4.66e+01 a.168.1.1 148158 2kcdA 120 4.67e+01 3cazA 294 4.71e+01 1yarO 237 4.77e+01 a.24.8.1 144615 3l82B 227 4.90e+01 2iuwA 238 5.11e+01 b.82.2.10 137709 3fbzA 140 5.19e+01 2bm0A 691 5.24e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 3crjA 199 5.46e+01 1ash 150 5.51e+01 1ash 1ashA 150 5.51e+01 a.1.1.2 15622 1umnA 165 5.79e+01 a.25.1.1 99607 2cavA 445 5.80e+01 1dgwA b.82.1.2,b.82.1.2 28094,28095 2infA 359 5.80e+01 3memA 457 5.91e+01 3breA 358 5.92e+01 1rdo1 113 5.93e+01 1rtm1 3d79A 179 6.02e+01 3b7nA 320 6.04e+01 1v4pA 157 6.08e+01 d.67.1.2 113533 1mngA 203 6.20e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1g31A 111 6.26e+01 1g31A b.35.1.1 24656 3e2qA 551 6.33e+01 1zfjA 491 6.50e+01 1ak5 d.37.1.1,c.1.5.1 144739,28638 1vphA 149 6.52e+01 d.273.1.1 113955 2i3oA 516 6.53e+01 d.153.1.6 137027 2atrA 138 6.55e+01 d.108.1.1 127305 2ph7A 246 6.56e+01 2p2wA 367 6.64e+01 1sqsA 242 6.67e+01 c.23.5.5 98968 3fogA 115 6.97e+01 1wznA 252 7.01e+01 c.66.1.43 121525 2dc3A 193 7.04e+01 1lfkA 398 7.07e+01 a.104.1.1 77926 1jpnA 296 7.16e+01 a.24.13.1,c.37.1.10 67039,67040 2zmeA 258 7.25e+01 3cuqA 234 7.37e+01 2osaA 202 7.38e+01 2oocA 113 7.60e+01 a.24.10.6 148919 1ea9C 583 7.62e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1kqqA 139 7.62e+01 a.4.3.1 72885 1sgwA 214 7.64e+01 c.37.1.12 105541 2vu5A 148 7.65e+01 2q3pA 112 7.80e+01 d.58.4.4 139798 1dcnA 424 7.91e+01 1auwA a.127.1.1 19420 2jfrA 234 7.93e+01 2kr5A 89 7.99e+01