# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gp6A 356 1.78e-43 b.82.2.1 65441 1w9yA 319 1.64e-41 b.82.2.1 120801 1odmA 331 2.83e-31 b.82.2.1 86875 1dcs 311 2.12e-21 1dcs 1dcsA 311 2.12e-21 b.82.2.1 28124 3e82A 364 1.01e-01 2hbtA 247 1.29e-01 1nx8A 273 1.45e-01 b.82.2.8 86374 2g19A 244 2.68e-01 1lwjA 441 6.54e-01 b.71.1.1,c.1.8.1 74303,74304 1xmxA 385 1.36e+00 c.52.1.26 115568 1q4gA 553 1.37e+00 a.93.1.2,g.3.11.1 95789,95790 1xedA 117 1.44e+00 b.1.1.1 115229 2vknA 70 1.55e+00 1vr3A 191 1.60e+00 b.82.1.6 120431 3hs5A 591 1.68e+00 3krkA 591 1.72e+00 2csgA 424 2.09e+00 b.82.2.12 130768 3emrA 310 2.43e+00 1gpuA 680 2.55e+00 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 3hs3A 277 2.67e+00 1trkA 680 2.74e+00 1trkA c.36.1.10,c.36.1.6,c.48.1.1 31803,31804,33090 2epjA 434 2.89e+00 3aekB 525 3.18e+00 1q3eA 207 3.40e+00 b.82.3.2 95669 2bg5A 324 3.55e+00 2du3A 534 3.57e+00 2ztgA 739 3.97e+00 2i7cA 283 3.99e+00 2gm6A 208 4.72e+00 b.82.1.19 147130 1ht6A 405 4.79e+00 b.71.1.1,c.1.8.1 83629,83630 1t7pA 698 4.96e+00 1t7pA c.55.3.5,e.8.1.1 33712,43005 2d51A 406 5.13e+00 1b9bA 255 5.18e+00 1amk c.1.1.1 28531 3muxA 251 5.46e+00 1bag 425 6.09e+00 1bag 3lm7A 249 6.11e+00 1rdo1 113 6.55e+00 1rtm1 2rdqA 288 6.97e+00 2a1xA 308 7.14e+00 b.82.2.9 126022 3jqqA 316 7.74e+00 3h1pA 260 7.86e+00 1m3uA 264 7.90e+00 c.1.12.8 84784 2ww2A 737 8.23e+00 1yn9A 169 8.33e+00 3mkvA 426 8.39e+00 3fgxA 114 8.43e+00 2cw5A 255 8.66e+00 2r8cA 426 9.13e+00 b.92.1.9,c.1.9.18 151698,151699 3dyjA 332 9.14e+00 1chkA 238 9.26e+00 1chkA d.2.1.7 36999 3m6yA 275 9.27e+00 1w8iA 156 1.01e+01 c.120.1.1 114368 2p5yA 311 1.01e+01 2basA 431 1.03e+01 c.1.33.1,d.110.6.2 128244,128245 1tq5A 242 1.04e+01 b.82.1.12 119311 3bpzA 202 1.05e+01 1sig 339 1.09e+01 1sig 1sigA 339 1.09e+01 a.177.1.1 19068 2hk0A 309 1.10e+01 2jkcA 538 1.11e+01 1ua7A 422 1.11e+01 b.71.1.1,c.1.8.1 107759,107760 2ebjA 192 1.15e+01 2ohxA 374 1.19e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 2aqjA 538 1.22e+01 3ei9A 432 1.25e+01 1ezfA 340 1.27e+01 1ezfA a.128.1.2 19440 1n8kA 374 1.37e+01 b.35.1.2,c.2.1.1 80298,80299 1s5jA 847 1.37e+01 c.55.3.5,e.8.1.1 112040,112041 2iu4A 336 1.46e+01 2ok8A 316 1.47e+01 1r9jA 673 1.56e+01 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1ve3A 227 1.59e+01 c.66.1.43 120010 1vctA 205 1.62e+01 a.7.12.1,d.286.1.1 119986,119987 1vraB 215 1.68e+01 2ps2A 371 1.71e+01 2d1uA 104 1.71e+01 3mkcA 394 1.73e+01 1z2nX 324 1.74e+01 1u3wA 374 1.75e+01 b.35.1.2,c.2.1.1 113013,113014 3c8bA 432 1.85e+01 1g71A 347 1.86e+01 1g71A d.264.1.1 43268 1fs1B 141 1.89e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1y0zA 330 1.95e+01 b.82.2.8 116317 1uz5A 402 2.00e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1ea9C 583 2.01e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 3ke3A 379 2.07e+01 2bdeA 470 2.09e+01 c.108.1.23 128335 2jhfA 374 2.09e+01 b.35.1.2,c.2.1.1 138314,138315 1ku2A 241 2.10e+01 a.4.13.1,a.177.1.1 83096,83097 1u67A 600 2.17e+01 a.93.1.2,g.3.11.1 107697,107698 1af7 274 2.21e+01 1af7 1af7A 274 2.21e+01 a.58.1.1,c.66.1.8 17928,34203 1oe4A 247 2.24e+01 c.18.1.3 86895 1jqnA 883 2.25e+01 c.1.12.3 77159 2pnqA 467 2.33e+01 2fctA 313 2.34e+01 b.82.2.9 133282 1vlwA 217 2.38e+01 c.1.10.1 108868 2q4aA 330 2.40e+01 b.82.2.8 139839 1o4vA 183 2.42e+01 c.23.8.1 86628 3ecyA 160 2.43e+01 1erjA 393 2.44e+01 1erjA b.69.4.1 27660 3m46A 666 2.48e+01 1odoA 408 2.49e+01 a.104.1.1 92783 3go5A 285 2.57e+01 2rg4A 216 2.60e+01 3mqtA 394 2.73e+01 1r9dA 787 2.78e+01 c.7.1.1 104865 1oe8A 211 2.84e+01 a.45.1.1,c.47.1.5 86905,86906 3danA 473 2.86e+01 1in4A 334 2.90e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 2c43A 323 2.96e+01 1wa3A 205 3.00e+01 c.1.10.1 120802 2ejbA 189 3.02e+01 2j6aA 141 3.07e+01 2g3mA 693 3.12e+01 3feqA 423 3.12e+01 1n46A 258 3.14e+01 a.123.1.1 85315 1in6A 334 3.14e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1uaeA 419 3.17e+01 d.68.2.2 39574 1j3mA 129 3.20e+01 d.129.7.1 103836 3bonA 425 3.20e+01 d.92.1.7 155457 1kqpA 271 3.23e+01 c.26.2.1 72883 3h92A 92 3.25e+01 2ot3A 274 3.25e+01 a.222.1.1 139311 3fogA 115 3.26e+01 2bgsA 344 3.30e+01 2hpsA 186 3.31e+01 1x9mA 698 3.32e+01 c.55.3.5,e.8.1.1 114999,115000 3d79A 179 3.34e+01 2e67A 264 3.35e+01 2odkA 89 3.41e+01 d.306.1.1 139030 1ekfA 365 3.44e+01 1ekfA e.17.1.1 59445 1yb2A 275 3.54e+01 c.66.1.13 122868 1xxlA 239 3.54e+01 c.66.1.41 116203 3luiA 115 3.63e+01 1ir6A 424 3.67e+01 c.107.1.2 71342 2z20A 432 3.72e+01 1sl8A 191 3.74e+01 a.39.1.5 112099 2qs8A 418 3.76e+01 b.92.1.9,c.1.9.18 151311,151312 2e8gA 241 3.79e+01 2aexA 346 3.80e+01 3k40A 475 3.81e+01 1pea 385 3.83e+01 1pea 1peaA 385 3.83e+01 c.93.1.1 35662 1h5zA 455 3.96e+01 a.104.1.1 90622 2zz3A 252 3.97e+01 2fdiA 211 4.00e+01 b.82.2.10 133311 2oy9A 98 4.13e+01 a.276.1.1 149063 3kwkA 175 4.16e+01 3gd2A 229 4.18e+01 2ha9A 446 4.22e+01 c.7.1.5 147251 3bevA 274 4.28e+01 3lwfA 159 4.36e+01 3e18A 359 4.40e+01 2fvkA 559 4.40e+01 b.92.1.3,c.1.9.6 134204,134205 1v77A 212 4.44e+01 c.6.3.2 108402 2h7oA 303 4.46e+01 2v82A 212 4.50e+01 1oo0A 147 4.52e+01 d.232.1.1 87182 2qkwA 164 4.52e+01 a.8.8.1 150848 2nogA 173 4.56e+01 2z1uA 343 4.58e+01 1ceo 343 4.60e+01 1ceo 1ceoA 343 4.60e+01 c.1.8.3 28808 3m0zA 249 4.61e+01 2zz2A 252 4.69e+01 1x1zA 252 4.71e+01 c.1.2.3 121613 3h9eA 346 4.72e+01 1dvjA 246 4.73e+01 1dvjA c.1.2.3 28546 1frb 315 4.74e+01 1frb 3g1yA 228 4.79e+01 3ialA 518 4.80e+01 2pr7A 137 4.82e+01 2zhzA 183 4.82e+01 2ohhA 404 4.84e+01 1km4A 247 4.84e+01 c.1.2.3 72740 1jfiB 179 4.84e+01 1jfiB a.22.1.3 62937 1km3A 247 4.85e+01 c.1.2.3 72739 2w7wA 194 4.88e+01 3a1nA 317 4.90e+01 3g1aA 228 4.90e+01 1nktA 922 4.91e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 3h3eA 267 4.98e+01 1e5rA 290 5.06e+01 1e5rA b.82.2.4 59276 1ei7A 158 5.09e+01 1rmvA a.24.5.1 16584 1h54A 754 5.15e+01 a.102.1.4,b.30.5.3 60634,60635 1thtA 305 5.19e+01 1thtA c.69.1.13 34711 1h5yA 253 5.20e+01 c.1.2.1 65638 2incB 322 5.21e+01 a.25.1.2 137525 2ijzA 428 5.22e+01 2gfoA 396 5.30e+01 d.3.1.9 135105 2d2rA 245 5.31e+01 3l1bA 233 5.32e+01 2vdwB 287 5.32e+01 1wxcB 134 5.33e+01 2g2cA 167 5.33e+01 c.57.1.1 134535 3hlyA 161 5.34e+01 2dplA 308 5.40e+01 3jy6A 276 5.40e+01 3g1vA 228 5.43e+01 2zz5A 252 5.45e+01 3daoA 283 5.61e+01 2dy1A 665 5.62e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 146607,146608,146609,146610,146611 2pmqA 377 5.62e+01 3gqiA 326 5.62e+01 2e7jA 371 5.63e+01 c.67.1.9 146704 1iurA 88 5.63e+01 a.2.3.1 90704 1r5eA 115 5.65e+01 a.8.8.1 111701 2pijA 67 5.65e+01 2zz4A 252 5.66e+01 3h7uA 335 5.66e+01 1zh8A 340 5.70e+01 c.2.1.3,d.81.1.5 125077,125078 3i6iA 346 5.72e+01 3ms5A 388 5.74e+01 2v1rA 80 5.75e+01 b.34.2.1 152411 2d5vA 164 5.79e+01 1w26A 432 5.88e+01 a.223.1.1,d.241.2.1,d.26.1.1 109085,109086,109087 2e1hA 235 5.93e+01 3kr6A 419 5.96e+01 2ip2A 334 5.97e+01 2i09A 403 5.98e+01 c.76.1.5,d.327.1.1 136946,136947 3jwgA 219 5.98e+01 3hahA 325 5.98e+01 1clc 639 6.01e+01 1clc 1clcA 639 6.01e+01 a.102.1.2,b.1.18.2 18835,21872 1c4xA 285 6.10e+01 1c4xA c.69.1.10 34684 2ahjA 206 6.13e+01 2ahjA d.149.1.1 41772 3i3qA 211 6.16e+01 2bh0A 208 6.17e+01 3d30A 208 6.17e+01 3i1jA 247 6.18e+01 2tpsA 227 6.20e+01 2tpsA c.1.3.1 28591 1avmA 201 6.21e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 1zeeA 403 6.23e+01 a.266.1.2 124981 3hnnA 262 6.25e+01 3hc5A 232 6.26e+01 2dqbA 376 6.27e+01 1mg7A 417 6.30e+01 d.14.1.6,d.58.26.6 84954,84955 1mxgA 435 6.31e+01 b.71.1.1,c.1.8.1 85193,85194 2f42A 179 6.32e+01 2fp3A 316 6.38e+01 2cw8A 537 6.42e+01 2a1hA 365 6.45e+01 e.17.1.1 125997 1mngA 203 6.49e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 3cnlA 262 6.49e+01 2vhhA 405 6.50e+01 1g67A 225 6.53e+01 c.1.3.1 60311 3d37A 381 6.58e+01 b.106.1.1,b.106.1.1 157269,157270 3c0bA 334 6.61e+01 2ie7A 318 6.64e+01 a.65.1.1 137293 1c96A 753 6.66e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1u06A 62 6.66e+01 b.34.2.1 119404 2inpA 494 6.67e+01 2v4vA 129 6.71e+01 2nxwA 565 6.73e+01 3cetA 334 6.78e+01 2eabA 899 6.83e+01 2aeuA 374 6.88e+01 c.67.1.8 126646 2azqA 311 6.90e+01 3k3qB 252 6.97e+01 1fhuA 320 7.01e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 1ohvA 472 7.02e+01 c.67.1.4 93031 3a4mA 260 7.04e+01 1p7tA 731 7.05e+01 c.1.13.1 94319 2zxrA 666 7.07e+01 3fxvA 233 7.22e+01 1txkA 498 7.22e+01 b.1.18.2,b.30.5.9 107425,107426 1ja9A 274 7.27e+01 c.2.1.2 62817 3dsqA 288 7.27e+01 1hd3A 62 7.30e+01 b.34.2.1 65802 2d6yA 202 7.37e+01 a.4.1.9,a.121.1.1 131313,131314 2iimA 62 7.39e+01 b.34.2.1 137434 1zdyA 307 7.41e+01 d.313.1.1 124961 1i4nA 251 7.42e+01 c.1.2.4 71114 2hcuA 213 7.45e+01 3glcA 295 7.48e+01 3gfaA 198 7.50e+01 3a46A 289 7.53e+01 2opiA 212 7.54e+01 2wjeA 247 7.59e+01 1um0A 365 7.60e+01 d.258.1.1 107942 1vffA 423 7.61e+01 c.1.8.4 120033 3gb5A 259 7.63e+01 2qtfA 364 7.65e+01 1e1hA 287 7.66e+01 d.92.1.7 83167 3gg2A 450 7.66e+01 1jilA 420 7.69e+01 c.26.1.1 66745 3bldA 386 7.76e+01 3egeA 261 7.83e+01 3gipA 480 7.99e+01