a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0569
- gi|238855733|ref|ZP_04646028.1|_435:502 putative adhesion exoprotein [Lactobacillus jensenii 269-3]
- gi|239633102|ref|ZP_04676133.1| predicted protein [Lactobacillus jensenii 1153]
- gi|282934024|ref|ZP_06339309.1| putative adhesion exoprotein [Lactobacillus jensenii 208-1]
- gi|238831634|gb|EEQ23976.1| putative adhesion exoprotein [Lactobacillus jensenii 269-3]
- gi|239529081|gb|EEQ68082.1| predicted protein [Lactobacillus jensenii 1153]
- gi|281301894|gb|EFA94153.1| putative adhesion exoprotein [Lactobacillus jensenii 208-1]
- gi|238855733|ref|ZP_04646028.1|_1020:1074 putative adhesion exoprotein [Lactobacillus jensenii 269-3]
- gi|239633102|ref|ZP_04676133.1| predicted protein [Lactobacillus jensenii 1153]
- gi|282934024|ref|ZP_06339309.1| putative adhesion exoprotein [Lactobacillus jensenii 208-1]
- gi|238831634|gb|EEQ23976.1| putative adhesion exoprotein [Lactobacillus jensenii 269-3]
- gi|239529081|gb|EEQ68082.1| predicted protein [Lactobacillus jensenii 1153]
- gi|281301894|gb|EFA94153.1| putative adhesion exoprotein [Lactobacillus jensenii 208-1]

              10        20        30           40        50        60  
              |         |         |            |         |         |  
   1 MDEDATITYVDDDKGGAQVGDIVTVTGKTDDSTT...YTVTIPDGYEYVGTDGGVVSSDGKTVTI
   2 -DQNITIKYVDDDNNGSQVGDNQTVKGKTDETVK...PEYTIPDGYDYVS---------GKVDSH
   3 ------------QDNNNEVVKTVPVNGHTSETVTvdgTKTTIPNGYELVDKDGNVIPT-----TI


            70         
            |         
   1 TFAADDSDNVVIHLKHG
   2 TMIAGDNTVITVHLKH-
   3 TFTGGDS----------