# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.002680 2bgiA 272 0.6374 2kt7A 102 1.219 1dp0A 1023 1.349 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1qwnA 1045 1.721 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2bmwA 304 2.014 b.43.4.2,c.25.1.1 128815,128816 2eixA 243 2.258 2vjxA 846 3.073 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 3elsA 158 3.096 1gvmA 136 4.783 b.109.1.1 70612 1mmuA 347 5.285 b.30.5.4 79303 1htyA 1015 5.640 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1gvhA 396 8.353 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 3bfqG 132 8.512 2k2sB 61 13.17 2cwrA 103 14.96 3gdcA 288 15.18 2vr4A 846 16.24 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153495,153496,153497,153498,153499 1h8gA 95 16.26 b.109.1.1 65735 3lywA 90 17.24 2qdxA 257 19.04 3isgA 251 19.64 1s3rA 535 20.15 1keoA 154 22.51 b.64.1.1 68534 1bx1A 314 22.54 b.43.4.2,c.25.1.1 25629,31519 3gldA 295 23.70 2osxA 481 23.91 1a65A 504 24.28 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 2zwnA 339 24.33 1jeqA 609 25.02 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 1e5pA 151 27.69 b.60.1.1 59272 3g5wA 318 28.17 1oi6A 205 28.42 b.82.1.1 103940 1x9lA 149 31.62 b.2.10.1 109528 2bibA 547 32.77 b.109.1.1,d.157.1.8 128581,128582 2jkdA 187 34.20 2rc5A 314 34.26 2ai6A 125 34.69 d.322.1.1 126818 2ebsA 789 35.23 b.69.13.1,b.69.13.1 146772,146773 3hulA 298 35.63 1gl4A 285 36.28 d.22.1.2,g.3.11.5 65286,65287 1waaA 93 37.15 2j8gA 339 37.34 b.109.1.1,c.1.8.8 147915,147916 1av6A 289 37.73 c.66.1.25 34218 1sy3A 184 37.80 b.60.1.1 106110 1c3mA 147 38.31 b.77.3.1 27983 2f6eA 127 38.41 1h09A 338 39.84 b.109.1.1,c.1.8.8 83420,83421 1gotB 340 39.95 b.69.4.1 27648 2kpuA 96 40.25 1efyA 350 41.54 a.41.1.1,d.166.1.2 17413,42275 1a8pA 258 42.02 b.43.4.2,c.25.1.1 25654,31544 2zu1A 183 43.65 2i9uA 439 43.99 b.92.1.4,c.1.9.9 147572,147573 1hfuA 503 44.87 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1keqA 248 45.34 b.74.1.1 72387 1kssA 571 45.53 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2hesX 330 47.10 1r4yA 136 47.25 d.1.1.3 97056 1tbgA 340 47.30 b.69.4.1 27649 3bemA 218 47.48 3ls8A 614 50.36 1de3A 150 50.84 d.1.1.3 36240 1umkA 275 51.72 b.43.4.2,c.25.1.1 113312,113313 1ndh 272 52.45 1uc2A 481 52.62 d.261.1.1 99161 1kcbA 340 54.04 b.6.1.3,b.6.1.3 90951,90952 1e3aB 560 54.59 3jxsA 174 55.71 1p2hA 571 59.87 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1bmlC 362 60.96 d.15.5.1,d.15.5.1,d.15.5.1 37729,37730,37731 1ejxA 100 61.22 d.8.1.1 83182 2vm8A 501 61.73 2bcjB 340 62.84 b.69.4.1 128289 3ihyA 600 64.27 1m64A 571 64.39 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 1gk9B 557 65.29 3mag 307 66.42 3h4oA 191 67.28 1aqcA 172 68.75 b.55.1.2 26983 2je8A 848 70.07 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 2v05A 311 70.48 1v39 322 70.67 1ubpA 101 71.83 d.8.1.1 37353 4ubpA 101 72.32 d.8.1.1 37352 3ff9A 115 72.67 1bawA 105 72.85 b.6.1.1 22868 1jjeA 222 73.19 d.157.1.1 63117 1vfsA 386 73.26 b.49.2.2,c.1.6.1 108584,108585 2vn4A 599 73.59 2wjnH 258 73.88 1ntvA 152 76.28 b.55.1.2 86168 2uxtA 451 77.14 1bglA 1023 78.74 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 3iu1A 383 79.96 1nox 205 80.21 1cidA 177 81.73 b.1.1.1,b.1.1.3 19740,21679 3d89A 157 82.46 2fvhA 120 84.85 1a0rB 340 86.02 b.69.4.1 27658 1avyA 74 86.16 h.1.17.1 45656 1skzA 119 86.28 g.3.15.1,g.3.15.1 44366,44367 3cmbA 283 88.83 d.347.1.1 156796 1r5sA 132 88.93 f.50.1.1 111709