# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.000730 1dp0A 1023 0.3193 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 2bgiA 272 1.019 3elsA 158 1.476 2bmwA 304 1.939 b.43.4.2,c.25.1.1 128815,128816 2kt7A 102 3.021 1qwnA 1045 3.218 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2eixA 243 3.346 1mmuA 347 7.142 b.30.5.4 79303 1gvmA 136 8.156 b.109.1.1 70612 2jkdA 187 8.854 1gvhA 396 9.332 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1htyA 1015 10.03 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1bglA 1023 10.78 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 2cwrA 103 11.36 2vjxA 846 12.49 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 3hulA 298 14.37 1keqA 248 14.78 b.74.1.1 72387 3gdcA 288 15.96 1bx1A 314 18.57 b.43.4.2,c.25.1.1 25629,31519 2k2sB 61 18.77 2f05A 105 20.50 a.59.1.1 132651 3bfqG 132 25.29 1a65A 504 26.01 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 3h09A 989 26.92 1r4yA 136 27.50 d.1.1.3 97056 1h8gA 95 28.61 b.109.1.1 65735 2rc5A 314 28.77 2ebsA 789 29.77 b.69.13.1,b.69.13.1 146772,146773 5fbpA 335 30.55 e.7.1.1 42873 1waaA 93 30.62 2zwnA 339 31.25 3g5wA 318 31.83 1jeqA 609 34.12 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 1keoA 154 34.88 b.64.1.1 68534 3lywA 90 35.01 2vm8A 501 35.85 1de3A 150 35.99 d.1.1.3 36240 1efyA 350 36.02 a.41.1.1,d.166.1.2 17413,42275 1nox 205 36.21 2e6zA 59 36.58 1cidA 177 38.74 b.1.1.1,b.1.1.3 19740,21679 3bemA 218 39.33 2uy6B 163 40.16 b.2.3.2 145763 1r5sA 132 40.61 f.50.1.1 111709 1hfuA 503 42.12 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1qhuA 460 43.40 b.66.1.1,b.66.1.1 27530,27531 2ai6A 125 44.08 d.322.1.1 126818 1av6A 289 44.59 c.66.1.25 34218 1gl4A 285 46.15 d.22.1.2,g.3.11.5 65286,65287 2kpuA 96 46.44 1c3mA 147 48.98 b.77.3.1 27983 3isgA 251 50.26 1x9lA 149 51.43 b.2.10.1 109528 1esc 306 51.92 1ii2A 524 52.13 c.91.1.1,c.109.1.1 66146,66147 2dstA 131 53.57 c.69.1.39 146561 2zu1A 183 53.93 2qdxA 257 54.97 2j8gA 339 57.92 b.109.1.1,c.1.8.8 147915,147916 3ls8A 614 59.19 3kczA 368 60.16 3h4oA 191 60.16 1nuyA 337 60.44 e.7.1.1 86213 1bawA 105 60.50 b.6.1.1 22868 1s3rA 535 64.54 1ntvA 152 64.84 b.55.1.2 86168 3mag 307 65.32 2uxtA 451 66.67 2osxA 481 67.69 1hehC 88 68.54 b.2.2.1 60972 1jjeA 222 69.10 d.157.1.1 63117 1skzA 119 69.64 g.3.15.1,g.3.15.1 44366,44367 1v39 322 69.82 1gprA 162 70.64 b.84.3.1 28267 2i5nH 258 71.87 b.41.1.1,f.23.10.1 137064,137065 3h5zA 438 72.63 1avyA 74 73.54 h.1.17.1 45656 3ff9A 115 74.33 2bibA 547 76.44 b.109.1.1,d.157.1.8 128581,128582 1yrrA 382 76.97 b.92.1.5,c.1.9.10 123935,123936 1h09A 338 77.77 b.109.1.1,c.1.8.8 83420,83421 3fpnA 119 77.90 2i9uA 439 78.59 b.92.1.4,c.1.9.9 147572,147573 1ejxA 100 79.31 d.8.1.1 83182 3ihyA 600 80.74 2wjnH 258 80.80 2vr4A 846 81.44 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153495,153496,153497,153498,153499 1sy3A 184 82.12 b.60.1.1 106110 1rcqA 357 82.90 b.49.2.2,c.1.6.1 104882,104883 1i7pA 274 84.04 b.43.4.2,c.25.1.1 66048,66049 1a8pA 258 86.23 b.43.4.2,c.25.1.1 25654,31544 2kpsA 98 88.27 2piaA 321 89.77 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704