# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.000467		
1dp0A	1023	0.9018	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22073,22074,23722,24346,28845
2bgiA	272	1.901		
2kt7A	102	4.937		
2vjxA	846	5.869	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	153203,153204,153205,153206,153207
2eixA	243	9.003		
1wv8A	73	9.152	d.304.1.1	121326
1gvmA	136	18.94	b.109.1.1	70612
3h4oA	191	21.71		
1wakA	397	26.57		
3iu1A	383	27.36		
2f05A	105	29.51	a.59.1.1	132651
3lywA	90	31.95		
1h8gA	95	36.26	b.109.1.1	65735
3bemA	218	36.44		
2bmwA	304	37.20	b.43.4.2,c.25.1.1	128815,128816
1wi1A	126	39.56	b.55.1.1	114658
1gl4A	285	40.45	d.22.1.2,g.3.11.5	65286,65287
2bkfA	87	43.37	d.15.2.2	128699
2k2sB	61	46.87		
2vr4A	846	47.75	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	153495,153496,153497,153498,153499
1sg2A	153	48.41	f.48.1.1	105519
1wj6A	101	52.95	d.15.2.2	114693
3g5wA	318	54.14		
1nox	205	55.20		
1bglA	1023	56.73	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22097,22098,23734,24358,28857
2kpuA	96	56.76		
1a65A	504	57.34	b.6.1.3,b.6.1.3,b.6.1.3	23148,23149,23150
3ff9A	115	58.91		
1cidA	177	59.32	b.1.1.1,b.1.1.3	19740,21679
2vm8A	501	59.60		
3l9sA	191	60.01		
1klnA	605	60.45	c.55.3.5,e.8.1.1	33693,42986
3elsA	158	61.11		
2rc5A	314	61.84		
3isgA	251	62.40		
1gvhA	396	63.01	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1bf5A	545	65.82	a.47.1.1,b.2.5.5,d.93.1.1	17766,22460,40526
3gdcA	288	67.22		
2e6zA	59	68.23		
3dq0A	516	69.36		
2f6eA	127	69.84		
1mmuA	347	71.37	b.30.5.4	79303
2iblA	130	72.02		
1eqnA	321	73.61	e.13.1.1	43256
2zwnA	339	73.91		
3gagA	206	75.58		
2uy6B	163	75.73	b.2.3.2	145763
3h5zA	438	76.13		
1s3rA	535	77.42		
1ot5A	477	77.46	b.18.1.20,c.41.1.1	87409,87410
1skzA	119	83.02	g.3.15.1,g.3.15.1	44366,44367
2kfnA	605	84.48	c.55.3.5,e.8.1.1	33682,42975
2jspA	87	84.94		
3gneA	252	85.67