# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.007810 2bgiA 272 0.2110 1dp0A 1023 0.2449 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1pcl 355 0.9223 3gldA 295 1.307 3elsA 158 1.702 2kt7A 102 4.569 1hc7A 477 4.615 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 2jkdA 187 7.868 3g5wA 318 8.713 1e8nA 710 8.801 b.69.7.1,c.69.1.4 27675,34643 1h2wA 710 9.836 b.69.7.1,c.69.1.4 76596,76597 1ndh 272 11.14 1r8nA 185 11.42 b.42.4.1 104851 1h8gA 95 11.43 b.109.1.1 65735 1skzA 119 12.24 g.3.15.1,g.3.15.1 44366,44367 2g7bA 137 12.98 1qfmA 710 13.57 b.69.7.1,c.69.1.4 27673,34641 1d8yA 605 14.07 c.55.3.5,e.8.1.1 33684,42977 1o6gA 710 16.77 b.69.7.1,c.69.1.4 81087,81088 1h2xA 710 17.99 b.69.7.1,c.69.1.4 76598,76599 2osxA 481 18.91 3hulA 298 19.99 3gfcA 425 21.25 1jiwI 106 21.50 b.61.2.1 63078 1aly 146 21.63 1d2vA 104 22.01 a.93.1.2 18697 2gdnA 267 22.68 1bmlC 362 23.67 d.15.5.1,d.15.5.1,d.15.5.1 37729,37730,37731 1klnA 605 24.93 c.55.3.5,e.8.1.1 33693,42986 1r4yA 136 25.42 d.1.1.3 97056 2hesX 330 26.22 1qorA 327 26.78 b.35.1.2,c.2.1.1 24766,29782 2vduB 450 29.42 2piaA 321 33.53 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1cdkA 350 34.31 d.144.1.7 41620 1a3k 137 34.88 2yzjA 169 34.93 1p9bA 442 35.21 c.37.1.10 94385 2hdiA 639 35.90 2v3fA 505 36.34 b.71.1.2,c.1.8.3 152453,152454 3jtyA 402 36.50 3cg5A 265 37.23 3fm0A 345 37.45 1ntvA 152 37.98 b.55.1.2 86168 2z2nA 299 38.11 2j8gA 339 38.26 b.109.1.1,c.1.8.8 147915,147916 2i5nH 258 38.44 b.41.1.1,f.23.10.1 137064,137065 2gj2A 85 38.99 2a97A 439 40.08 1keqA 248 40.29 b.74.1.1 72387 1umkA 275 41.47 b.43.4.2,c.25.1.1 113312,113313 3cmbA 283 41.97 d.347.1.1 156796 1qx4A 274 43.20 b.43.4.2,c.25.1.1 104624,104625 1eqfA 280 43.36 a.29.2.1,a.29.2.1 16972,16973 2k2sB 61 44.05 1tbgA 340 44.10 b.69.4.1 27649 3lydA 161 45.73 1gvmA 136 46.17 b.109.1.1 70612 2grvA 621 46.90 3dmqA 968 47.92 1x9lA 149 48.42 b.2.10.1 109528 2dt4A 143 48.50 2aq5A 402 48.71 3jz7A 214 49.55 1eexB 224 50.06 c.51.3.1 33213 2uxtA 451 51.24 2cvbA 188 52.13 c.47.1.10 130859 1we0A 187 52.82 c.47.1.10 120930 1vffA 423 52.84 c.1.8.4 120033 2hx0A 154 53.41 d.290.1.3 136830 1x54A 434 53.43 2cfmA 561 55.87 2wvxA 744 56.98 3bemA 218 57.10 3f9pA 114 58.56 1waaA 93 58.78 1av6A 289 60.76 c.66.1.25 34218 2e6zA 59 61.47 2qdxA 257 61.68 3bfqG 132 62.87 2kfnA 605 63.62 c.55.3.5,e.8.1.1 33682,42975 1rdzA 337 63.94 e.7.1.1 42882 1n8jA 186 64.04 c.47.1.10 85401 3ga2A 246 64.61 1ae6H 218 66.16 b.1.1.1,b.1.1.2 20211,21223 1czfA 362 66.94 b.80.1.3 28031 3a09A 490 66.98 1g6aA 271 67.25 e.3.1.1 42704 1s3rA 535 67.41 3lk41 286 67.96 3kh0A 140 68.22 1iweA 457 68.88 c.37.1.10 71486 1efyA 350 71.92 a.41.1.1,d.166.1.2 17413,42275 2vpuA 354 72.62 3lywA 90 73.63 3gm8A 801 74.03 1v39 322 74.06 1i7pA 274 74.71 b.43.4.2,c.25.1.1 66048,66049 3ezyA 344 75.11 1gw1A 376 75.25 c.1.8.3 76361 2vhsA 217 75.42 2bibA 547 75.58 b.109.1.1,d.157.1.8 128581,128582 2kpuA 96 76.77 2cwrA 103 76.83 1a8pA 258 77.42 b.43.4.2,c.25.1.1 25654,31544 1qcxA 359 78.04 b.80.1.2 28028 1keoA 154 78.38 b.64.1.1 68534 3isgA 251 79.10 1j31A 262 79.31 d.160.1.2 90808 1ehiA 377 79.74 c.30.1.2,d.142.1.1 31716,41484 1de3A 150 79.78 d.1.1.3 36240 3kczA 368 79.81 3euhC 234 80.06 2we2A 286 80.22 2vhhA 405 80.28 1jb9A 316 80.71 b.43.4.2,c.25.1.1 62840,62841 3kizA 394 80.96 3c5aA 264 81.29 2ai6A 125 82.29 d.322.1.1 126818 1gotB 340 84.24 b.69.4.1 27648 1kaeA 434 84.34 c.82.1.2 72247 2yxmA 100 84.38 3kptA 355 86.02 3dw0A 294 87.02 1rcqA 357 88.57 b.49.2.2,c.1.6.1 104882,104883