# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.001693 1dp0A 1023 0.08937 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 2bgiA 272 0.8333 2bmwA 304 1.575 b.43.4.2,c.25.1.1 128815,128816 2eixA 243 1.818 2kt7A 102 2.020 1qwnA 1045 2.733 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 3elsA 158 3.012 2vjxA 846 5.199 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 1htyA 1015 7.578 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1bglA 1023 8.574 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 1gvmA 136 11.56 b.109.1.1 70612 3bemA 218 12.42 1mmuA 347 12.82 b.30.5.4 79303 2k2sB 61 13.44 1gvhA 396 17.55 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1gl4A 285 20.72 d.22.1.2,g.3.11.5 65286,65287 2jkdA 187 21.12 1keqA 248 21.84 b.74.1.1 72387 1cidA 177 23.66 b.1.1.1,b.1.1.3 19740,21679 2rc5A 314 25.43 1bx1A 314 26.07 b.43.4.2,c.25.1.1 25629,31519 2e6zA 59 26.17 3lywA 90 26.53 1a65A 504 27.05 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 1de3A 150 27.15 d.1.1.3 36240 2f05A 105 27.88 a.59.1.1 132651 3h4oA 191 28.24 2vr4A 846 30.07 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153495,153496,153497,153498,153499 2kpuA 96 31.49 2ebsA 789 31.58 b.69.13.1,b.69.13.1 146772,146773 3hulA 298 31.59 1efyA 350 32.64 a.41.1.1,d.166.1.2 17413,42275 2zu1A 183 33.02 2bibA 547 33.14 b.109.1.1,d.157.1.8 128581,128582 2ai6A 125 33.24 d.322.1.1 126818 2as0A 396 33.68 b.122.1.9,c.66.1.51 127227,127228 3gdcA 288 33.84 3isgA 251 34.12 2uy6B 163 34.88 b.2.3.2 145763 1ntvA 152 36.26 b.55.1.2 86168 5fbpA 335 37.25 e.7.1.1 42873 2vm8A 501 37.42 1r4yA 136 38.24 d.1.1.3 97056 1c3mA 147 39.21 b.77.3.1 27983 1nox 205 39.39 1h8gA 95 44.58 b.109.1.1 65735 1hfuA 503 44.72 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 3ls8A 614 45.85 1gprA 162 46.01 b.84.3.1 28267 1yrrA 382 46.02 b.92.1.5,c.1.9.10 123935,123936 1r5sA 132 46.72 f.50.1.1 111709 2dstA 131 47.22 c.69.1.39 146561 3bfqG 132 50.42 2zwnA 339 52.70 1x9lA 149 53.47 b.2.10.1 109528 3h5zA 438 53.67 2wjnH 258 54.86 1sy3A 184 55.49 b.60.1.1 106110 1bawA 105 56.17 b.6.1.1 22868 3gagA 206 58.06 3iu1A 383 58.46 2qdxA 257 63.14 3ihyA 600 63.75 1av6A 289 64.47 c.66.1.25 34218 1ii2A 524 65.84 c.91.1.1,c.109.1.1 66146,66147 1klnA 605 66.03 c.55.3.5,e.8.1.1 33693,42986 2hesX 330 66.48 3g5wA 318 66.64 1kssA 571 70.18 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1nuyA 337 71.75 e.7.1.1 86213 1oi6A 205 72.05 b.82.1.1 103940 3gneA 252 72.14 1e5pA 151 72.45 b.60.1.1 59272 2kpsA 98 72.67 1s3rA 535 73.03 1jjeA 222 73.12 d.157.1.1 63117 1h09A 338 73.84 b.109.1.1,c.1.8.8 83420,83421 2i5nH 258 75.27 b.41.1.1,f.23.10.1 137064,137065 3kczA 368 75.59 2uxtA 451 76.57 1hnrA 47 77.12 a.155.1.1 17896 1waaA 93 78.33 3jxsA 174 79.63 3il0A 131 81.45 2cwrA 103 82.28 1c24A 263 83.67 d.127.1.1 41148 1ubpC 570 83.77 b.92.1.1,c.1.9.2 28432,29054 2j8gA 339 83.99 b.109.1.1,c.1.8.8 147915,147916 2je8A 848 84.96 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1i7pA 274 85.08 b.43.4.2,c.25.1.1 66048,66049 1ie7C 570 85.83 b.92.1.1,c.1.9.2 62315,62316 2f6eA 127 87.02 1jeqA 609 87.10 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 3mag 307 88.12 2bkfA 87 88.27 d.15.2.2 128699 4ubpA 101 88.28 d.8.1.1 37352 1v39 322 88.34