# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.000902 1dp0A 1023 0.1552 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 2bgiA 272 1.009 2bmwA 304 1.744 b.43.4.2,c.25.1.1 128815,128816 2kt7A 102 3.156 3elsA 158 3.200 1qwnA 1045 3.479 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2eixA 243 4.942 1gvhA 396 10.40 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1bglA 1023 11.36 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 1keqA 248 11.72 b.74.1.1 72387 1mmuA 347 12.03 b.30.5.4 79303 1htyA 1015 12.20 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1gl4A 285 12.22 d.22.1.2,g.3.11.5 65286,65287 2jkdA 187 12.42 1gvmA 136 15.84 b.109.1.1 70612 3bemA 218 18.19 2vm8A 501 19.82 3bfqG 132 21.06 3hulA 298 25.52 2zwnA 339 27.91 1nox 205 28.44 2ebsA 789 28.54 b.69.13.1,b.69.13.1 146772,146773 1c3mA 147 29.27 b.77.3.1 27983 2cwrA 103 30.29 1bx1A 314 30.48 b.43.4.2,c.25.1.1 25629,31519 2k2sB 61 33.79 2vjxA 846 33.79 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 2f05A 105 33.91 a.59.1.1 132651 2ai6A 125 34.49 d.322.1.1 126818 2e6zA 59 34.79 1esc 306 35.02 3h4oA 191 35.44 3isgA 251 35.70 3g5wA 318 36.13 2dstA 131 37.53 c.69.1.39 146561 3gdcA 288 40.84 1ii2A 524 41.18 c.91.1.1,c.109.1.1 66146,66147 2rc5A 314 41.33 3lywA 90 42.00 2zu1A 183 42.30 3iu1A 383 42.51 3fpnA 119 42.64 1cidA 177 43.10 b.1.1.1,b.1.1.3 19740,21679 2bibA 547 44.42 b.109.1.1,d.157.1.8 128581,128582 1r4yA 136 44.61 d.1.1.3 97056 1waaA 93 45.22 2kpuA 96 45.32 1yrrA 382 46.84 b.92.1.5,c.1.9.10 123935,123936 1h8gA 95 48.34 b.109.1.1 65735 3gneA 252 49.44 1av6A 289 50.64 c.66.1.25 34218 1efyA 350 51.68 a.41.1.1,d.166.1.2 17413,42275 2qdxA 257 57.02 1de3A 150 57.48 d.1.1.3 36240 2kpsA 98 58.04 1x9lA 149 59.38 b.2.10.1 109528 1hnrA 47 60.01 a.155.1.1 17896 1avyA 74 61.02 h.1.17.1 45656 3gffA 331 61.46 3c4nA 405 61.62 1a65A 504 63.38 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 3hlzA 269 63.66 1ntvA 152 64.08 b.55.1.2 86168 2i9uA 439 64.19 b.92.1.4,c.1.9.9 147572,147573 1hehC 88 64.79 b.2.2.1 60972 3kczA 368 65.25 1aa0 113 66.62 1bn8A 420 66.69 b.80.1.1 28022 2uy6B 163 67.03 b.2.3.2 145763 1v39 322 72.01 1ejxA 100 72.47 d.8.1.1 83182 3gagA 206 72.54 2uxtA 451 74.53 1oi6A 205 75.30 b.82.1.1 103940 1ie7C 570 76.56 b.92.1.1,c.1.9.2 62315,62316 3mag 307 77.07 1bawA 105 77.94 b.6.1.1 22868 2g3wA 182 79.26 c.52.1.33 147077 2iblA 130 80.62 1ubpA 101 82.16 d.8.1.1 37353 1keoA 154 82.76 b.64.1.1 68534 1hfuA 503 83.90 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 3h5zA 438 84.00 1rcqA 357 84.39 b.49.2.2,c.1.6.1 104882,104883 4ubpA 101 84.44 d.8.1.1 37352 2piaA 321 85.19 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2fvhA 120 86.37