# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.000762 1dp0A 1023 0.4039 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 2bmwA 304 1.325 b.43.4.2,c.25.1.1 128815,128816 2bgiA 272 2.134 3elsA 158 2.447 2kt7A 102 3.131 2eixA 243 3.498 1qwnA 1045 5.721 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1gvmA 136 6.992 b.109.1.1 70612 1gvhA 396 9.697 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2vm8A 501 10.87 1nox 205 10.96 3bemA 218 11.92 2vjxA 846 14.65 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 2jkdA 187 15.50 1htyA 1015 16.46 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 3h4oA 191 20.31 1bglA 1023 20.49 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 1bx1A 314 20.65 b.43.4.2,c.25.1.1 25629,31519 2f05A 105 21.83 a.59.1.1 132651 3hulA 298 23.73 1yrrA 382 24.31 b.92.1.5,c.1.9.10 123935,123936 1mmuA 347 24.46 b.30.5.4 79303 3gagA 206 24.50 1keqA 248 24.96 b.74.1.1 72387 3lywA 90 25.04 2k2sB 61 25.59 2uxtA 451 26.42 2cwrA 103 27.78 1h8gA 95 28.16 b.109.1.1 65735 3bfqG 132 28.71 2ebsA 789 29.21 b.69.13.1,b.69.13.1 146772,146773 1de3A 150 29.29 d.1.1.3 36240 1r4yA 136 29.78 d.1.1.3 97056 1esc 306 31.10 2bibA 547 31.94 b.109.1.1,d.157.1.8 128581,128582 1ubpC 570 36.54 b.92.1.1,c.1.9.2 28432,29054 1gl4A 285 36.78 d.22.1.2,g.3.11.5 65286,65287 2kpsA 98 38.60 3cdzA 754 38.71 1uc2A 481 39.14 d.261.1.1 99161 1ie7C 570 39.71 b.92.1.1,c.1.9.2 62315,62316 1pcl 355 40.12 3isgA 251 41.90 2ai6A 125 42.80 d.322.1.1 126818 1av6A 289 43.62 c.66.1.25 34218 1efyA 350 43.85 a.41.1.1,d.166.1.2 17413,42275 2qdxA 257 45.05 3iu1A 383 45.61 2ig6A 150 45.89 2e6zA 59 46.04 2rc5A 314 48.41 1r5sA 132 48.64 f.50.1.1 111709 1waaA 93 50.98 2kpuA 96 53.20 1cidA 177 54.98 b.1.1.1,b.1.1.3 19740,21679 2iblA 130 57.65 1x9lA 149 60.21 b.2.10.1 109528 3mag 307 60.26 2j8gA 339 61.10 b.109.1.1,c.1.8.8 147915,147916 2zwnA 339 61.86 3g5wA 318 63.25 2vr4A 846 64.71 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153495,153496,153497,153498,153499 2i9uA 439 64.79 b.92.1.4,c.1.9.9 147572,147573 1c3mA 147 65.20 b.77.3.1 27983 3kczA 368 65.74 3gneA 252 66.43 1v39 322 67.26 1a65A 504 68.37 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 3fpnA 119 68.79 1hehC 88 71.64 b.2.2.1 60972 1keoA 154 76.11 b.64.1.1 68534 2dstA 131 77.12 c.69.1.39 146561 1vpt 348 78.66 1bf5A 545 79.16 a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1bawA 105 80.30 b.6.1.1 22868 1ybqB 390 80.66 1avyA 74 80.67 h.1.17.1 45656 3feqA 423 80.77 2g3wA 182 81.00 c.52.1.33 147077 2ifaA 208 81.43 d.90.1.1 137329 1ox3A 109 81.71 h.1.17.1 93668 1wi1A 126 83.45 b.55.1.1 114658 2f6eA 127 83.52 2r7eA 742 84.28 1hnrA 47 84.69 a.155.1.1 17896 1gprA 162 85.50 b.84.3.1 28267 1dqbA 83 86.62 g.3.11.1,g.3.11.1 44318,44319 2jspA 87 89.70