# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.003889		
2kt7A	102	6.550		
1wv8A	73	16.20	d.304.1.1	121326
2eixA	243	21.05		
1dp0A	1023	21.06	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22073,22074,23722,24346,28845
2cwrA	103	22.39		
1t3bA	211	23.53	c.47.1.9,d.17.3.1	106341,106342
1ot5A	477	24.95	b.18.1.20,c.41.1.1	87409,87410
2jspA	87	26.78		
2vjxA	846	39.71	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	153203,153204,153205,153206,153207
1mmuA	347	40.88	b.30.5.4	79303
3h4oA	191	41.05		
1h8gA	95	41.48	b.109.1.1	65735
3bemA	218	44.02		
1h09A	338	45.80	b.109.1.1,c.1.8.8	83420,83421
3fpnA	119	46.18		
1nox	205	46.62		
2f05A	105	46.69	a.59.1.1	132651
2bmwA	304	48.17	b.43.4.2,c.25.1.1	128815,128816
1sy3A	184	50.65	b.60.1.1	106110
1r64A	481	52.38	b.18.1.20,c.41.1.1	97140,97141
3l9sA	191	57.31		
3d1mC	102	60.23		
2ai6A	125	61.01	d.322.1.1	126818
2cygA	312	61.79	c.1.8.3	131025
3boeA	210	62.96	c.154.1.1	155444
1hcz	252	68.27		
2bgiA	272	71.06		
1xxqA	161	71.21		
2vr4A	846	71.37	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	153495,153496,153497,153498,153499
1hehC	88	71.74	b.2.2.1	60972
1bf5A	545	75.30	a.47.1.1,b.2.5.5,d.93.1.1	17766,22460,40526
1ci3M	249	76.79	b.2.6.1,b.84.2.2	22480,28266
3h5zA	438	81.92		
1wj6A	101	82.10	d.15.2.2	114693
1aqcA	172	82.83	b.55.1.2	26983
2wdcA	562	83.68		
2uvpA	186	84.45		
1ntvA	152	84.65	b.55.1.2	86168
2p11A	231	84.82		
1sg2A	153	85.13	f.48.1.1	105519
3elsA	158	88.64		
1dwkA	156	89.81	a.35.1.4,d.72.1.1	17075,39606