# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.000652		
1qwnA	1045	4.383	a.8.3.1,b.30.5.6,c.6.2.1	96487,96488,96489
2kt7A	102	6.317		
1dp0A	1023	8.421	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22073,22074,23722,24346,28845
3bemA	218	10.34		
1nox	205	12.33		
2cwrA	103	13.61		
3h4oA	191	15.22		
1htyA	1015	17.23	a.8.3.1,b.30.5.6,c.6.2.1	83064,83065,83066
2bmwA	304	17.52	b.43.4.2,c.25.1.1	128815,128816
1esc	306	20.68		
1wv8A	73	21.53	d.304.1.1	121326
1hehC	88	22.69	b.2.2.1	60972
2eixA	243	24.35		
3lywA	90	24.97		
3gagA	206	27.05		
1rhfA	182	27.47	b.1.1.1,b.1.1.4	97469,97470
1adwA	123	27.61	b.6.1.1	22893
2q9kA	151	27.77		
2bgiA	272	28.31		
1mmuA	347	28.40	b.30.5.4	79303
2vjxA	846	31.55	b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3	153203,153204,153205,153206,153207
1keqA	248	32.74	b.74.1.1	72387
2f05A	105	36.67	a.59.1.1	132651
1gl4A	285	38.25	d.22.1.2,g.3.11.5	65286,65287
2kpuA	96	39.35		
3elsA	158	42.54		
1exg	110	43.48		
2a1vA	144	47.34	d.198.3.1	126019
3gnfB	387	47.69		
1t3bA	211	52.73	c.47.1.9,d.17.3.1	106341,106342
1dwkA	156	56.80	a.35.1.4,d.72.1.1	17075,39606
2k2sB	61	57.28		
1r0rE	274	57.73	c.41.1.1	96735
1waaA	93	58.92		
1ot5A	477	61.39	b.18.1.20,c.41.1.1	87409,87410
3d6rA	158	62.24		
2ifaA	208	63.14	d.90.1.1	137329
1sg2A	153	65.04	f.48.1.1	105519
2bkfA	87	66.50	d.15.2.2	128699
3isgA	251	69.38		
1gu3A	149	69.52	b.18.1.14	76350
3ls8A	614	72.04		
2pg3A	232	73.45	c.26.2.1	149454
1gt6A	269	73.70	c.69.1.17	76342
2j43A	219	74.23	b.3.1.3,b.3.1.3	147864,147865
1q90A	292	76.58	b.2.6.1,b.84.2.2,f.23.23.1	96238,96239,96240
1ulo	152	77.56		
2uy6B	163	78.30	b.2.3.2	145763
3gdcA	288	79.51		
3ihyA	600	80.44		
3g5wA	318	80.58		
2zwnA	339	80.66		
2f2lA	167	81.29	d.118.1.1	132843
1s3rA	535	83.16		
1lssA	140	87.18	c.2.1.9	74246
3m5uA	361	88.08		
3fpnA	119	89.07