# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2v05A 311 2.006 2nv0A 196 2.243 c.23.16.1 138625 2hrvA 142 3.223 b.47.1.4 26429 1r9gA 216 7.099 c.23.16.1 97258 2bibA 547 8.035 b.109.1.1,d.157.1.8 128581,128582 2ywjA 186 10.12 2v4uA 289 11.17 2zxlA 285 11.46 1dc1A 323 14.25 c.52.1.11 33321 2zdtA 364 15.36 d.144.1.7 154400 1i1qB 192 16.29 c.23.16.1 61544 2oayA 391 16.39 1jmoA 480 16.84 e.1.1.1 77138 3eljA 369 16.94 2ww5A 468 17.86 1uhgA 385 17.87 e.1.1.1 88491 3ei3B 383 18.89 2iubA 363 19.15 d.328.1.1,f.17.3.1 137669,137670 2kvoA 120 20.09 1ci0A 228 20.97 b.45.1.1 25750 3cgmA 158 22.72 1gvmA 136 22.83 b.109.1.1 70612 1pfoA 500 22.99 f.9.1.1 43826 3gc7A 366 23.79 1qlpA 394 25.51 e.1.1.1 42628 1erxA 184 26.35 b.60.1.1 27164 2ux7A 122 28.00 2j8gA 339 28.61 b.109.1.1,c.1.8.8 147915,147916 1uwcA 261 30.15 c.69.1.17 100101 3dxkC 372 30.23 3hucA 360 31.91 1q7rA 219 33.67 c.23.16.1 96054 1ka9H 200 34.12 c.23.16.1 77308 1sy3A 184 34.23 b.60.1.1 106110 2yzhA 171 35.19 3f1sA 385 36.00 1fmtA 314 36.07 b.46.1.1,c.65.1.1 25758,34174 1kcbA 340 37.21 b.6.1.3,b.6.1.3 90951,90952 1imvA 398 39.24 e.1.1.1 62591 1k8kC 372 39.53 b.69.4.1 68308 3ihyA 600 42.47 2ol2A 395 43.15 2dt4A 143 45.00 2h88A 621 45.12 1yxaA 398 45.85 1z45A 699 46.23 b.30.5.4,c.2.1.2 124427,124428 1l1nA 183 46.37 b.47.1.4 73476 2hn2A 354 47.77 d.328.1.1,f.17.3.1 136619,136620 3gdcA 288 48.10 1as6A 343 48.55 b.6.1.3,b.6.1.3 23090,23091 1ng2A 193 48.83 b.34.2.1,b.34.2.1 85660,85661 3e0hA 158 49.23 1h8gA 95 49.63 b.109.1.1 65735 1k9vF 201 50.07 c.23.16.1 68365 2kcoA 133 51.19 1vlbA 907 51.71 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 3htnA 149 54.60 3b9fI 395 55.68 1qxhA 167 56.17 c.47.1.10 96528 2vbkA 514 58.73 1ywrA 360 60.31 2f7lA 455 60.59 3lwkA 191 61.29 2qugA 394 61.60 3i57A 185 63.18 3f85A 463 63.67 1pfo 500 63.77 2ejxA 139 63.96 2b1pA 355 65.02 d.144.1.7 127672 1et7A 341 66.80 b.6.1.3,b.6.1.3 23070,23071 3ls8A 614 67.22 2fyqA 194 67.95 1fgqA 839 68.48 a.119.1.1,b.12.1.1 59826,59827 1rzhH 260 69.33 b.41.1.1,f.23.10.1 98162,98163 2jkgA 179 69.93 3h4fA 336 70.90 1qdlB 195 71.55 c.23.16.1 31437 3e1tA 512 72.02 2fojA 155 73.01 1mmuA 347 73.16 b.30.5.4 79303 1dmuA 299 73.95 c.52.1.4 33294 1bkbA 136 74.68 b.34.5.2,b.40.4.5 24609,25341 3kdaA 301 75.67 2v8pA 271 76.75 3e53A 480 77.85 1xodA 118 78.59 b.55.1.4 122202 2a6hA 315 78.84 d.74.3.1,d.181.1.1 126260,126261 1i7qB 193 79.29 c.23.16.1 61902 3gldA 295 82.40 1tg7A 971 83.82 b.149.1.1,b.18.1.27,b.18.1.27,b.71.1.5,c.1.8.14 112418,112419,112420,112421,112422 2vn4A 599 84.16 2f6eA 127 85.18 2eu9A 355 85.99 3fg2P 404 86.41 2q0xA 335 86.68 1esiA 262 86.83 e.3.1.1 42682 2cz8A 69 87.57 d.230.2.1 146432 2vyxA 69 89.17 1ovaA 386 89.24 e.1.1.1 42619