# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.001911		
2kt7A	102	0.1920		
1cjcA	460	1.935	c.3.1.1,c.4.1.1	30319,30604
2gzbA	166	3.387		
2go2A	163	3.667		
3g5wA	318	4.655		
1bsgA	266	7.654	e.3.1.1	42729
2gpjA	252	9.641		
2f05A	105	9.724	a.59.1.1	132651
2f6eA	127	11.99		
2p74A	263	12.43		
2qqzA	126	13.34		
3ib7A	330	13.82		
2idqA	105	17.64		
3ihwA	184	18.41		
3dp7A	363	19.34		
3ic8A	310	20.60		
3lydA	161	20.77		
3dr2A	305	22.03		
1suvE	345	22.75	i.21.1.1	99011
1w24A	182	22.98	d.159.1.7	120579
3c12A	138	23.64		
1bxvA	91	25.76	b.6.1.1	22875
2bibA	547	29.04	b.109.1.1,d.157.1.8	128581,128582
3fv7A	244	30.26		
3dtnA	234	30.76		
2p5zX	491	32.79	b.40.8.1,b.106.1.1,b.106.1.1	149263,149264,149265
2g3wA	182	33.71	c.52.1.33	147077
2zwnA	339	34.33		
2qc5A	300	34.44		
1smpI	101	35.28	b.61.2.1	27417
3g4pA	244	35.67		
2ww5A	468	36.82		
2w18A	356	37.25		
2o2gA	223	37.76		
2v05A	311	38.66		
1a8pA	258	40.26	b.43.4.2,c.25.1.1	25654,31544
2r6hA	290	42.60		
3f7mA	279	44.02		
2nnrA	110	44.08	b.1.26.1	148321
2ot9A	180	45.24	c.52.1.33	149009
2il5A	171	45.64	d.129.3.5	147723
1i2sA	282	47.37	e.3.1.1	71104
2bcjB	340	50.52	b.69.4.1	128289
2h7wA	131	50.98	b.1.26.1	136225
1dqzA	280	51.65	c.69.1.3	34638
1jb9A	316	52.13	b.43.4.2,c.25.1.1	62840,62841
3jqqA	316	54.32		
1vqoT	120	55.56	b.34.5.1	120381
1auiA	521	56.54	d.159.1.3	42085
1efyA	350	57.90	a.41.1.1,d.166.1.2	17413,42275
3gnhA	403	57.99		
3hrzB	252	58.22		
1avwB	171	59.88	b.42.4.1	25599
2gfaA	119	60.24	b.34.9.1,b.34.9.1	135089,135090
1ifcA	132	60.68	b.60.1.2	27173
1xuvA	178	61.17	d.129.3.5	116069
2gjsA	176	62.63	c.37.1.8	135287
1icmA	131	62.89	b.60.1.2	27174
2rf5A	258	63.18		
1a0rB	340	63.32	b.69.4.1	27658
1zu0A	529	63.83		
1m6kA	251	66.23	e.3.1.1	78695
2qdxA	257	66.65		
2r3sA	335	66.81		
2k2sB	61	67.05		
2a4vA	159	69.40	c.47.1.10	126163
3gu3A	284	72.45		
2pia	321	74.13		
2oc3A	303	74.46		
1pwgA	349	76.61	e.3.1.1	104340
2gpfA	72	77.38	d.100.2.1	147153
3gdcA	288	78.82		
1cqxA	403	79.40	a.1.1.2,b.43.4.2,c.25.1.5	15635,25667,31562
2fblA	153	79.72	d.63.1.2	133249
2j8gA	339	80.36	b.109.1.1,c.1.8.8	147915,147916
2gimA	106	80.36	b.6.1.1	135244
2k2oA	123	80.96		
3ib0A	345	81.82		
3jszA	525	81.96		
2hfxA	260	82.17		
1bhgA	613	83.09	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
2oizA	361	84.56		
1gotB	340	84.60	b.69.4.1	27648
2wuuA	421	85.38		
2wsaA	438	86.48		
2piaA	321	87.00	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
1xdfA	157	89.32	d.129.3.1	121868
2bmjA	178	89.94	c.37.1.8	128797