# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3i57A	185	0.001235		
2kt7A	102	0.1617		
2go2A	163	3.377		
2gzbA	166	3.767		
1cjcA	460	3.941	c.3.1.1,c.4.1.1	30319,30604
3g5wA	318	4.302		
3lydA	161	5.373		
2gpjA	252	5.395		
3dr2A	305	7.669		
3ic8A	310	11.80		
2p74A	263	13.97		
2qqzA	126	14.93		
1bsgA	266	15.24	e.3.1.1	42729
3ihwA	184	15.93		
2w18A	356	17.17		
2f05A	105	20.28	a.59.1.1	132651
2zwnA	339	20.81		
2idqA	105	22.46		
3ib7A	330	25.77		
3dp7A	363	27.99		
2o2gA	223	28.01		
2ww5A	468	28.95		
3dtnA	234	32.05		
2p5zX	491	32.17	b.40.8.1,b.106.1.1,b.106.1.1	149263,149264,149265
2r6hA	290	32.51		
1bhgA	613	32.69	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
1cqxA	403	34.74	a.1.1.2,b.43.4.2,c.25.1.5	15635,25667,31562
3c12A	138	34.84		
1b6g	310	34.98		
2qdxA	257	35.31		
2f6eA	127	37.76		
2bibA	547	39.10	b.109.1.1,d.157.1.8	128581,128582
1suvE	345	39.18	i.21.1.1	99011
1z1yA	186	41.42		
2v05A	311	41.53		
1a8pA	258	41.72	b.43.4.2,c.25.1.1	25654,31544
2bcjB	340	42.27	b.69.4.1	128289
1w24A	182	42.74	d.159.1.7	120579
3jqqA	316	42.87		
1dynA	125	44.82	b.55.1.1	26955
2nnrA	110	45.09	b.1.26.1	148321
2qc5A	300	45.54		
1gvhA	396	46.23	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2gzsA	278	47.03	c.69.1.38	147209
2k2sB	61	47.17		
3frxA	319	47.69		
1jb9A	316	47.72	b.43.4.2,c.25.1.1	62840,62841
3lz8A	329	48.59		
1vr5A	547	48.87	c.94.1.1	120437
1gotB	340	50.09	b.69.4.1	27648
1vqoT	120	50.40	b.34.5.1	120381
3g4pA	244	50.45		
2adzA	178	50.58	b.55.1.1	126599
1a0rB	340	51.57	b.69.4.1	27658
2gimA	106	53.69	b.6.1.1	135244
3h1tA	590	54.65		
2wsaA	438	56.08		
2il5A	171	56.59	d.129.3.5	147723
1x9lA	149	56.91	b.2.10.1	109528
2wuuA	421	58.01		
1auiA	521	58.76	d.159.1.3	42085
2oizA	361	59.22		
1ifcA	132	60.50	b.60.1.2	27173
1dqzA	280	60.61	c.69.1.3	34638
2h7wA	131	61.72	b.1.26.1	136225
1icmA	131	64.43	b.60.1.2	27174
2agyA	361	64.66		
3h5zA	438	65.99		
1xuvA	178	67.45	d.129.3.5	116069
1wba	175	68.42		
1qlwA	328	69.63	c.69.1.15	34722
3gu3A	284	70.99		
3gdcA	288	71.72		
1zu0A	529	73.02		
1smpI	101	73.59	b.61.2.1	27417
2r3sA	335	74.47		
1jmxB	349	74.82	b.69.2.2	66906
3gnhA	403	75.16		
2pia	321	75.18		
3demA	278	75.53		
1pwgA	349	77.22	e.3.1.1	104340
3hrzB	252	79.93		
1oo2A	119	81.44	b.3.4.1	93372
3k7mX	431	84.02		
2iwrA	178	84.55		
2g3wA	182	85.19	c.52.1.33	147077
2gpfA	72	86.69	d.100.2.1	147153
3e5zA	296	86.74		
2oz3A	404	86.85		
1odtC	318	88.07	c.69.1.25	86885
3c6bA	299	89.45		
2ej8A	160	89.88