# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3i57A 185 0.002119 2kt7A 102 0.1265 3g5wA 318 1.512 1cjcA 460 2.207 c.3.1.1,c.4.1.1 30319,30604 3gnhA 403 4.095 1vr5A 547 5.390 c.94.1.1 120437 1ifcA 132 6.279 b.60.1.2 27173 1icmA 131 6.487 b.60.1.2 27174 2zwnA 339 6.957 1zu0A 529 7.191 2f6eA 127 10.22 3dr2A 305 10.93 1cqxA 403 11.25 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2pia 321 12.01 3ihwA 184 12.58 3dp7A 363 14.07 2r6hA 290 15.15 2piaA 321 15.17 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2ftwA 521 16.71 b.92.1.3,c.1.9.6 134083,134084 2v05A 311 18.13 1a8pA 258 18.81 b.43.4.2,c.25.1.1 25654,31544 2r3sA 335 18.90 1ifc 132 21.83 2qc5A 300 22.58 2k2oA 123 22.73 3i53A 332 22.87 2kk6A 116 22.87 1smpI 101 23.26 b.61.2.1 27417 2f05A 105 23.48 a.59.1.1 132651 3h7lA 586 23.53 2g3wA 182 23.67 c.52.1.33 147077 2ww5A 468 25.10 2gpfA 72 25.56 d.100.2.1 147153 2gpjA 252 25.68 1w24A 182 25.88 d.159.1.7 120579 3c12A 138 26.02 3hm7A 448 26.43 1q90A 292 27.12 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 1vqoT 120 27.15 b.34.5.1 120381 2go2A 163 28.01 1ijqA 316 28.74 b.68.5.1,g.3.11.1 62506,62507 3lydA 161 30.30 2yxmA 100 30.70 2bibA 547 33.08 b.109.1.1,d.157.1.8 128581,128582 1suvE 345 33.52 i.21.1.1 99011 1gvhA 396 33.82 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2qdxA 257 34.77 3dtnA 234 36.29 2ot9A 180 40.39 c.52.1.33 149009 1avyA 74 40.66 h.1.17.1 45656 3iu1A 383 43.18 3fgbA 361 45.09 2oryA 346 45.54 1t1gA 364 46.14 c.41.1.2 106246 2v43A 303 46.20 1u58A 253 46.44 b.1.1.2,d.19.1.1 144387,144388 1efyA 350 46.79 a.41.1.1,d.166.1.2 17413,42275 2zl8A 638 46.94 b.30.2.1,d.17.2.1,d.17.2.1 154620,154621,154622 2arcA 164 47.78 b.82.4.1 28148 2nooA 502 47.84 2uvfA 608 48.41 2gimA 106 50.38 b.6.1.1 135244 2bgiA 272 50.97 3hrzB 252 51.22 1bhgA 613 52.49 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2oz3A 404 52.74 1bx7 55 53.74 1bx7A 55 53.74 g.3.15.1 44355 1jb9A 316 54.22 b.43.4.2,c.25.1.1 62840,62841 1g43A 160 54.51 b.2.2.2 22392 2z2nA 299 54.87 3i1cA 324 54.99 3fpnA 119 55.70 1rcqA 357 55.71 b.49.2.2,c.1.6.1 104882,104883 2d1wA 638 56.50 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2gzbA 166 57.15 1pmjX 185 58.00 b.18.1.18 104194 3griA 424 58.12 1lfoA 127 58.28 b.60.1.2 27223 2iblA 130 59.22 1ep0A 185 59.25 b.82.1.1 28080 2qqzA 126 59.34 1nykA 165 59.85 b.33.1.1 86408 1f7sA 139 62.76 d.109.1.2 40857 1nc7A 138 63.31 b.123.1.1 85549 1b6g 310 63.53 2z1qA 577 64.44 2c5qA 240 64.56 3gu3A 284 64.98 3f7wA 288 65.31 3f7mA 279 65.49 2bmwA 304 65.64 b.43.4.2,c.25.1.1 128815,128816 2psbA 320 65.97 c.153.1.1 149819 2wuuA 421 66.75 2wbiA 428 67.14 2rf5A 258 68.44 2vm8A 501 69.96 2dk3A 86 70.13 b.34.19.1 146532 1hehC 88 70.22 b.2.2.1 60972 2hnxA 136 70.24 b.60.1.2 136633 1vcaA 202 71.10 b.1.1.3,b.1.1.4 21649,21685 2wsaA 438 72.44 1pwgA 349 73.08 e.3.1.1 104340 2bk8A 97 73.59 3cg8A 343 75.69 1xqwA 293 75.87 1bsgA 266 76.09 e.3.1.1 42729 1lj2C 28 76.57 3h5zA 438 76.92 2nnrA 110 77.02 b.1.26.1 148321 1x9lA 149 77.63 b.2.10.1 109528 1nxmA 197 78.90 b.82.1.1 86385 3eoiA 124 79.09 1jk7A 323 79.31 d.159.1.3 63144 3g4pA 244 79.53 1zlqA 502 79.54 c.94.1.1 125253 2k2sB 61 79.70 2idqA 105 79.79 1rrjA 565 79.88 a.2.8.1,d.163.1.2,e.15.1.1 105078,105079,105080 2a74B 188 79.99 2ixkA 184 80.04 1dpeA 507 80.33 c.94.1.1 35799 3erbA 223 80.89 1w6gA 646 82.41 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 2ftbA 125 84.28 b.60.1.2 134057 3dsmA 328 84.46 2prvA 153 84.65 d.369.1.1 149817 2iwrA 178 85.24 2i9uA 439 85.49 b.92.1.4,c.1.9.9 147572,147573 3ib7A 330 85.79 1dx5I 118 87.24 g.3.11.1,g.3.11.1,g.3.11.1 44302,44303,44304 3es1A 172 88.07 2p4bA 295 88.50 1aa0A 113 88.82 h.1.17.1 45659 1ejxC 567 89.25 b.92.1.1,c.1.9.2 83184,83185 2glfA 450 89.53 1ogiA 303 89.83 b.43.4.2,c.25.1.1 92914,92915